View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13034_low_5 (Length: 517)
Name: NF13034_low_5
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_low_5 |
 | |
|
| [»] scaffold0064 (2 HSPs) |
| | |
|
| [»] scaffold0128 (3 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 16)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 7328585 - 7328089
Alignment:
| Q |
1 |
caccatatctatgacaaagttctaaagtaaagcaaatactcacacatttgaaacgaaggcaaaactaagtacataaattgaaataaatattatgttggag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7328585 |
caccatatctatgacaaagttctaaagtaaagcaaatactcacacat---aaacgaaggcaaaactaagtacataaattgaaataaatattatgttggag |
7328489 |
T |
|
| Q |
101 |
aaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtctatta |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7328488 |
aaaaacttactttcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtactctatta |
7328389 |
T |
|
| Q |
201 |
gttctcaagttatagagaattgcttggttatgtaggcagcttgcgaatacgattgtatcaccatcttcagaaagatgcaatgcctttaatttcaaccacg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7328388 |
gttctcaagttatagagaattgcttggttatgcaggcagcttgcgaatacgattgtatcaccatcttcagaaagatgcaatgcctttaatttcaaccacg |
7328289 |
T |
|
| Q |
301 |
agtaaacaaatcttgaatttaaattcacttgaaggttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttcca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7328288 |
agtaaacaaatcttgaatttaaattcacttgaaggttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttcca |
7328189 |
T |
|
| Q |
401 |
tataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaacatttgatgaatgtgtcgactcctcagcaccaggaggg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7328188 |
tataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaacatttgatgaatgtgtcgactcctcagcaccaggaggg |
7328089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 67 - 492
Target Start/End: Original strand, 7310936 - 7311361
Alignment:
| Q |
67 |
aagtacataaattgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatat |
166 |
Q |
| |
|
||||||||||| |||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7310936 |
aagtacataaactgaaataaatattatgttagaaaaaaacttactttcaataggttgaaaccagactttcgacataatccttgatagagaaccaacatat |
7311035 |
T |
|
| Q |
167 |
ctttttgttaactctagattccagtagtctattagttctcaagttatagagaattgcttggttatgtaggcagcttgcgaatacgattgtatcaccatct |
266 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||| |
|
|
| T |
7311036 |
ctttttgttaactctagatttcagtactctattagttctcaagttatacagaattgcttggttatctaggcagcttccgaatactattgtatcaccatct |
7311135 |
T |
|
| Q |
267 |
tcagaaagatgcaatgcctttaatttcaaccacgagtaaacaaatcttgaatttaaattcacttgaaggttgtgatagctaaatgtaaagaatttagtcc |
366 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||| | |||| |||||||||||||||||||| || | ||||| |
|
|
| T |
7311136 |
tcagaaagatgcaacggctttaatttcaacctcgagtaaacaactcttgaatttaaattcattcgaagattgtgatagctaaatgtaaataactgagtcc |
7311235 |
T |
|
| Q |
367 |
aagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaacatt |
466 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
7311236 |
aagaccggtcgtctccaaattctgtcatcttccatataacaaaatctgttccgttgaaatcttgagaaaagcagaaggagttcatcaacacacaaacact |
7311335 |
T |
|
| Q |
467 |
tgatgaatgtgtcgactcctcagcac |
492 |
Q |
| |
|
|||| |||||||||||| ||||||| |
|
|
| T |
7311336 |
tgataaatgtgtcgacttgtcagcac |
7311361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 7306318 - 7306603
Alignment:
| Q |
1 |
caccatatctatgacaaagttctaaagtaaagcaaatactcacacatttgaaacgaaggcaaaactaagtacataaattgaaataaatattatgttggag |
100 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| ||||| || |||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7306318 |
caccatatctatggcaaagttttaaagtaaaggaaataatcgcacaattgaaaccaagtaaaaaccaagtacataaattgaaataaatattatgttggag |
7306417 |
T |
|
| Q |
101 |
aaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtctatta |
200 |
Q |
| |
|
|||||| ||| |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
7306418 |
aaaaacctacgttcaataggttgagaccagactttcgacataatccttgatagagaaccaacatatctttttgttgactctagatttcagtactctatta |
7306517 |
T |
|
| Q |
201 |
gttctcaagttatagagaattgcttggttatgtaggcagcttgcgaatacgattgtatcaccatcttcagaaagatgcaatgcctt |
286 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7306518 |
gttctcaagttatacagaattgcttggttatctaggcagcttgcgaatacgattgtatcaccatcttcagaaagatgcaatgcctt |
7306603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 336 - 462
Target Start/End: Original strand, 35205919 - 35206045
Alignment:
| Q |
336 |
ttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaa |
435 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |
|
|
| T |
35205919 |
ttgtgatagctaaatttaaggaattgagtccaagacttgtcatttccaaattctgtcatcttccatataacaaaatcagttccattgaaatcatgataaa |
35206018 |
T |
|
| Q |
436 |
agcataaggagttcatcaacacacaaa |
462 |
Q |
| |
|
| || ||||||||| ||| |||||||| |
|
|
| T |
35206019 |
aacaaaaggagttcctcagcacacaaa |
35206045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 98 - 295
Target Start/End: Original strand, 35205658 - 35205863
Alignment:
| Q |
98 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtcta |
197 |
Q |
| |
|
||||| |||||||||||| | ||||||||||| |||||||||||||||||||||| | ||||||||||||| ||||||| | ||||| ||||| |||| |
|
|
| T |
35205658 |
gagaacaacttacattcaactagttgaaaccaggctttcgacataatccttgatagtgaaccaacatatcttattgttaattgaagatttcagtactcta |
35205757 |
T |
|
| Q |
198 |
ttagttctcaagttatagag-----aattgcttggttatgtaggcagct---tgcgaatacgattgtatcaccatcttcagaaagatgcaatgcctttaa |
289 |
Q |
| |
|
|| |||||| |||||||||| |||| |||||| | |||| | | ||||||||||| |||||||||||| |||||||||||||||| | |||| |
|
|
| T |
35205758 |
ttggttctccagttatagagaatataattacttggtgttttaggttgtttgctgcgaatacgagtgtatcaccatcctcagaaagatgcaatggcattaa |
35205857 |
T |
|
| Q |
290 |
tttcaa |
295 |
Q |
| |
|
| |||| |
|
|
| T |
35205858 |
tatcaa |
35205863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 336 - 458
Target Start/End: Original strand, 21210476 - 21210598
Alignment:
| Q |
336 |
ttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaa |
435 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||||| ||||||||||||| | |||||||||||||||||||||||| ||| ||||||||||||| ||| |
|
|
| T |
21210476 |
ttgtgatagctaaatttaaggaatagagtccaagacttgtcatctccaaactttgtcatcttccatataacaaaatcagttccgttgaaatcatgataaa |
21210575 |
T |
|
| Q |
436 |
agcataaggagttcatcaacaca |
458 |
Q |
| |
|
||||||| ||||| | |||||| |
|
|
| T |
21210576 |
ggcataagaagttcctaaacaca |
21210598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 120 - 282
Target Start/End: Complemental strand, 20415161 - 20414999
Alignment:
| Q |
120 |
gttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaa |
219 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| |||||||| | || ||||||||||| | || || || | ||||| ||||| | |||||||||| |
|
|
| T |
20415161 |
gttgaaaccagactttcaacataacagttgatagagaaccaacatttgttattgttaactctgggtttcaatactatattatttctccaattatagagaa |
20415062 |
T |
|
| Q |
220 |
ttgcttggttatgtaggcagcttgcgaatacgattgtatcaccatcttcagaaagatgcaatg |
282 |
Q |
| |
|
||||| ||| ||||||| | |||||||||| | ||||||||||| || |||||||||||| |
|
|
| T |
20415061 |
ttgctcggtcttgtaggctgtttgcgaatacaagtgtatcaccatttttgaaaagatgcaatg |
20414999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 342 - 464
Target Start/End: Original strand, 21218709 - 21218831
Alignment:
| Q |
342 |
tagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagcata |
441 |
Q |
| |
|
||||||||| | | ||||| |||||||||| | |||||||||||||| ||||| | ||||||||| ||||| ||| |||||||| ||| |||| || | |
|
|
| T |
21218709 |
tagctaaatttgaggaattgagtccaagacttatcatctccaaattccgtcatttgccatataaccaaatcagttccattgaaatcgtgataaaaacaaa |
21218808 |
T |
|
| Q |
442 |
aggagttcatcaacacacaaaca |
464 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
21218809 |
aggagttcatcaacacacaaaca |
21218831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 121 - 295
Target Start/End: Original strand, 21210247 - 21210420
Alignment:
| Q |
121 |
ttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaat |
220 |
Q |
| |
|
|||||||||||||| |||||||||||| | || || |||||| |||||| | ||||| | | |||| ||||| | ||||| |||| |||||||| |||| |
|
|
| T |
21210247 |
ttgaaaccagactt-cgacataatcctcggtacagaaccaacgtatcttatggttaattttggatttcagtactgtattatttctgaagttatatagaac |
21210345 |
T |
|
| Q |
221 |
tgcttggttatgtaggcagcttgcgaatacgattgtatcaccatcttcagaaagatgcaatgcctttaatttcaa |
295 |
Q |
| |
|
||||||||| || ||| | || ||||||| ||||||||| || |||||||||||||| | |||||||||||| |
|
|
| T |
21210346 |
tgcttggttttgcaggttgtttacgaatactattgtatcaatattttcagaaagatgcaccggctttaatttcaa |
21210420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 322 - 464
Target Start/End: Complemental strand, 20414971 - 20414826
Alignment:
| Q |
322 |
aattcacttgaaggttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgtt---tt |
418 |
Q |
| |
|
|||||||| ||||||| | || | ||||| ||| ||||| |||||||||| ||||||||||||||| ||||||||||||||| |||||| ||| || |
|
|
| T |
20414971 |
aattcactcgaaggttatcattgttaaatttaaggaattgagtccaagacttgtcatctccaaatttcatcatcttccatataataaaatcggttccgtt |
20414872 |
T |
|
| Q |
419 |
gttgaaatcatgagaaaagcataaggagttcatcaacacacaaaca |
464 |
Q |
| |
|
| | | || |||| |||| || ||||||||||| |||||||||||| |
|
|
| T |
20414871 |
gatcatattatgataaaaacaaaaggagttcatgaacacacaaaca |
20414826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 411
Target Start/End: Original strand, 13888093 - 13888164
Alignment:
| Q |
340 |
gatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaat |
411 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||| | || |||||||||| |||||| |||||||||||||||| |
|
|
| T |
13888093 |
gatagctaaatttaaggaattgagtccaagacttttcgtctccaaattttgtcattttccatataacaaaat |
13888164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 464
Target Start/End: Complemental strand, 20456552 - 20456449
Alignment:
| Q |
364 |
tccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttga---aatcatgagaaaagcataaggagttcatcaacacaca |
460 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||||||||||||||||||||| ||| ||||| | |||| |||| || |||||||||||||||||||| |
|
|
| T |
20456552 |
tccaagacttgtcatccccaaattttgtcatcttccatataacaaaattggttccgttgatcgtgttatgataaaaacaaaaggagttcatcaacacaca |
20456453 |
T |
|
| Q |
461 |
aaca |
464 |
Q |
| |
|
|||| |
|
|
| T |
20456452 |
aaca |
20456449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 439
Target Start/End: Complemental strand, 36260285 - 36260225
Alignment:
| Q |
379 |
ctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagca |
439 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||| ||| |||||| ||||||||| |
|
|
| T |
36260285 |
ctccaaattcttccatcttccatataacaaaatcagttttcttgtaatcattagaaaagca |
36260225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 467
Target Start/End: Original strand, 22473213 - 22473284
Alignment:
| Q |
396 |
ttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaacattt |
467 |
Q |
| |
|
||||||||||||||||| |||| || ||||||||| ||| || | |||||||||||| |||||||||||| |
|
|
| T |
22473213 |
ttccatataacaaaatcagtttcttttaaatcatgataaacacacagggagttcatcaatacacaaacattt |
22473284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 439
Target Start/End: Complemental strand, 36263123 - 36263025
Alignment:
| Q |
341 |
atagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagca |
439 |
Q |
| |
|
|||||||| | ||| || || |||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||| || | |||| ||||||||| |
|
|
| T |
36263123 |
atagctaactttaatgagttgagtccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttttcttatagtcattagaaaagca |
36263025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 21218469 - 21218553
Alignment:
| Q |
99 |
agaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctag |
183 |
Q |
| |
|
|||| ||||||| |||| | |||||||||| |||||||||||||| | || ||| |||||| |||||||||||||| ||||| |
|
|
| T |
21218469 |
agaagaacttactttcaagaagttgaaaccaagctttcgacataatcatagactgaggaccaacttatctttttgttaattctag |
21218553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 31442749 - 31442874
Alignment:
| Q |
98 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtcta |
197 |
Q |
| |
|
||||| ||||||| |||| | |||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||| || || || |||| |
|
|
| T |
31442749 |
gagaagaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactactcta |
31442848 |
T |
|
| Q |
198 |
ttagttctcaagttatagagaattgc |
223 |
Q |
| |
|
||| ||||| | |||||||||||||| |
|
|
| T |
31442849 |
ttatttctccaattatagagaattgc |
31442874 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 431
Target Start/End: Original strand, 31443005 - 31443061
Alignment:
| Q |
375 |
tcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatga |
431 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| |||| || ||||||||| |
|
|
| T |
31443005 |
tcatctccaaattttgtcatcttccatataacgaaatcggtttcattcaaatcatga |
31443061 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 324 - 410
Target Start/End: Complemental strand, 24292 - 24206
Alignment:
| Q |
324 |
ttcacttgaaggttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaa |
410 |
Q |
| |
|
|||| |||||| | ||||||||||||| ||| ||||| ||| |||||| | ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24292 |
ttcatttgaagatcgtgatagctaaatttaaggaattgagttcaagacttttcatctccatattctgtcatcttccatataacaaaa |
24206 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 24491 - 24360
Alignment:
| Q |
98 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtcta |
197 |
Q |
| |
|
||||| ||||||| ||| || |||| ||||| ||||| ||||||| || ||||| |||||||||||||||||||||| |||| || || || |||| |
|
|
| T |
24491 |
gagaagaacttactctcaacaagttggaaccatgctttcaacataattgtttatagatcaccaacatatctttttgttaaccctagttttcactactcta |
24392 |
T |
|
| Q |
198 |
ttagttctcaagttatagagaattgcttggtt |
229 |
Q |
| |
|
||| || || | ||||||||||||||| |||| |
|
|
| T |
24391 |
ttatttatccaattatagagaattgctcggtt |
24360 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 431
Target Start/End: Complemental strand, 4192 - 4117
Alignment:
| Q |
356 |
gaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatga |
431 |
Q |
| |
|
||||| ||||||||| | |||| ||||||||||||||||||||||||||| ||||| || || |||||||||||| |
|
|
| T |
4192 |
gaattgagtccaagaattttcatttccaaattctgtcatcttccatataaccaaatcggtcttcttgaaatcatga |
4117 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 467
Target Start/End: Complemental strand, 25690 - 25562
Alignment:
| Q |
339 |
tgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagc |
438 |
Q |
| |
|
|||||| ||||| ||| ||||| |||||||| | ||| ||||||||| ||| ||||||||||||||||| |||| || ||||| ||| ||| | |
|
|
| T |
25690 |
tgataggtaaatttaaggaattgggtccaagaatttacatttccaaattccatcaatttccatataacaaaatcagtttcctttaaatcgtgataaacac |
25591 |
T |
|
| Q |
439 |
ataaggagttcatcaacacacaaacattt |
467 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
|
|
| T |
25590 |
atagggagttcatcaacacacaaacattt |
25562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 467
Target Start/End: Complemental strand, 8642 - 8513
Alignment:
| Q |
338 |
gtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaag |
437 |
Q |
| |
|
||||||||||||| || ||||| ||||||| | |||| ||||||||| ||| ||||||||||||||||| |||| || ||||| ||| ||| |
|
|
| T |
8642 |
gtgatagctaaatcgaaggaattggatccaagaattttcatttccaaattccatcaatttccatataacaaaatcagtttcctttaaatcttgataaaca |
8543 |
T |
|
| Q |
438 |
cataaggagttcatcaacacacaaacattt |
467 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| |
|
|
| T |
8542 |
catagggagttcattaacacacaaacattt |
8513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 431
Target Start/End: Complemental strand, 42298166 - 42298091
Alignment:
| Q |
356 |
gaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatga |
431 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||| |||||||||||||||| ||||| || || ||||||| |||| |
|
|
| T |
42298166 |
gaattgagtccaagaattttcatctccaaattctatcatcttccatataactaaatcagtattcttgaaattatga |
42298091 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 42298420 - 42298342
Alignment:
| Q |
99 |
agaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaa |
177 |
Q |
| |
|
|||| ||||||| |||| | |||||||||| |||||||||||||| || || ||| |||||||||||||| |||||| |
|
|
| T |
42298420 |
agaagaacttactttcaagaagttgaaaccaagctttcgacataatctttcattgaggaccaacatatctttctgttaa |
42298342 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 20980669 - 20980603
Alignment:
| Q |
346 |
taaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatc |
412 |
Q |
| |
|
||||| ||| ||| |||||||||||| ||| ||| |||||||||||| ||||||||||||||||| |
|
|
| T |
20980669 |
taaatttaaggaacttagtccaagactcttcaactctaaattctgtcattttccatataacaaaatc |
20980603 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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