View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13034_low_7 (Length: 455)
Name: NF13034_low_7
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 12 - 440
Target Start/End: Complemental strand, 10280177 - 10279749
Alignment:
| Q |
12 |
atcatcaatctcatccatccaagcatttttcaatgatttaggatcaacattcttcaaagcataccaaacagcagtattaaccttaaatccagatccaaaa |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10280177 |
atcatcaatctcatccatccaagcatttttcaatgatttaggatcaacattcttcaaagcataccaaacagcagtattaaccttaaatccagatccaaaa |
10280078 |
T |
|
| Q |
112 |
gccatttgccaaatcttatgtccctttttaactctccccttagcttcacaataagacaattcataccaaacagaacttgatgatgtgttgccatatctat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10280077 |
gccatttgccaaatcttatgtccctttttaactctccccttagcttcacaataagacaattcataccaaacagaacttgatgatgtgttaccatatctat |
10279978 |
T |
|
| Q |
212 |
atagtgtcattcttgaaggctccatatgaaaatcatcaagctcaagactcttttgcatccgatcaagaactgctctaccgcccgtatgcatgcaaaattg |
311 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10279977 |
atagtgtcattcttgaaggctccatatgaaaatcatcaagctcaagactcttttgcatccgatcaagaactgctctaccgcccgtatgcatgcaaaattg |
10279878 |
T |
|
| Q |
312 |
atcgaacgctaacttgaaatttggcatgtatggttcgatcttcttcttcaaaatcttcctctcaactaaatttttcacatacttgagtttttccgaaatt |
411 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10279877 |
atcgaacgctaacttgaaatttggcatgtatggttcgatcttcttcttcaaaatcttcctctcaactaaatttttcacatacttgagtttttccgaaatt |
10279778 |
T |
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| Q |
412 |
gggaggactaatggaccgagcgatgttat |
440 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
10279777 |
gggaggactaatggaccgagcgatgttat |
10279749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 51 - 233
Target Start/End: Original strand, 27776419 - 27776601
Alignment:
| Q |
51 |
aggatcaacattcttcaaagcataccaaacagcagtattaaccttaaatccagatccaaaagccatttgccaaatcttatgtccctttttaactctcccc |
150 |
Q |
| |
|
||||||||||||| | |||||| ||||||||||||| ||| ||||||||||| ||||| || |||||||||||| ||| || || | | || ||| |
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| T |
27776419 |
aggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttccc |
27776518 |
T |
|
| Q |
151 |
ttagcttcacaataagacaattcataccaaacagaacttgatgatgtgttgccatatctatatagtgtcattcttgaaggctc |
233 |
Q |
| |
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|||||||||||||||| ||| |||||||||||||||| ||| || || ||||||||||| |||||||||||||||||||| |
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| T |
27776519 |
ttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagtgtcattcttgaaggctc |
27776601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 52 - 246
Target Start/End: Original strand, 19742781 - 19742975
Alignment:
| Q |
52 |
ggatcaacattcttcaaagcataccaaacagcagtattaaccttaaatccagatccaaaagccatttgccaaatcttatgtccctttttaactctcccct |
151 |
Q |
| |
|
|||||||||||| | || ||| ||||||||||||| ||| |||||||||||| ||||| || |||||||||||| ||| || ||| | | ||| || | |
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| T |
19742781 |
ggatcaacattccttaatgcacaccaaacagcagtgttacacttaaatccagacccaaatgcaatttgccaaatcctatcaccttttcttattcttcctt |
19742880 |
T |
|
| Q |
152 |
tagcttcacaataagacaattcataccaaacagaacttgatgatgtgttgccatatctatatagtgtcattcttgaaggctccatatgaaaatca |
246 |
Q |
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||||||||||||| | ||| ||||||||||||||||| ||| ||||| ||||||||||| |||||||| |||||||||| | ||||||||| |
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| T |
19742881 |
tagcttcacaatatgccaactcataccaaacagaactacttgaagtgttaccatatctataaagtgtcatctttgaaggctctaattgaaaatca |
19742975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 52 - 246
Target Start/End: Complemental strand, 19797307 - 19797113
Alignment:
| Q |
52 |
ggatcaacattcttcaaagcataccaaacagcagtattaaccttaaatccagatccaaaagccatttgccaaatcttatgtccctttttaactctcccct |
151 |
Q |
| |
|
|||||||||||| | || ||| ||||||||||||| ||| |||||||||||| ||||| || |||||||||||| ||| || ||| | | ||| || | |
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| T |
19797307 |
ggatcaacattccttaatgcacaccaaacagcagtgttacacttaaatccagacccaaatgcaatttgccaaatcctatcaccttttcttattcttcctt |
19797208 |
T |
|
| Q |
152 |
tagcttcacaataagacaattcataccaaacagaacttgatgatgtgttgccatatctatatagtgtcattcttgaaggctccatatgaaaatca |
246 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||| ||| ||||| ||||||||||| |||||||| |||||||||| | ||||||||| |
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|
| T |
19797207 |
tagcttcacaatatgccaactcataccaaacagaactacttgaagtgttaccatatctataaagtgtcatctttgaaggctctaattgaaaatca |
19797113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 52 - 246
Target Start/End: Original strand, 19539738 - 19539932
Alignment:
| Q |
52 |
ggatcaacattcttcaaagcataccaaacagcagtattaaccttaaatccagatccaaaagccatttgccaaatcttatgtccctttttaactctcccct |
151 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||| ||| |||||||| ||| ||||| || |||||||||||| ||| || ||| | | ||| || | |
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| T |
19539738 |
ggatcaacattctttaatgcacaccaaacagcagtgttacacttaaatctagacccaaatgcaatttgccaaatcctatcaccttttcttattcttcctt |
19539837 |
T |
|
| Q |
152 |
tagcttcacaataagacaattcataccaaacagaacttgatgatgtgttgccatatctatatagtgtcattcttgaaggctccatatgaaaatca |
246 |
Q |
| |
|
||||||||||||| | ||| |||||||||||| |||| ||| ||||| ||||||||||| |||||||| |||||||||| | ||||||||| |
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|
| T |
19539838 |
tagcttcacaatatgccaactcataccaaacaaaactacttgaagtgttaccatatctataaagtgtcatctttgaaggctctaattgaaaatca |
19539932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 52 - 246
Target Start/End: Original strand, 19671661 - 19671855
Alignment:
| Q |
52 |
ggatcaacattcttcaaagcataccaaacagcagtattaaccttaaatccagatccaaaagccatttgccaaatcttatgtccctttttaactctcccct |
151 |
Q |
| |
|
|||||||||||| | || ||| ||||||||| ||| ||| |||||||||||| ||||| || |||||||||||| ||| || ||| ||||| || | |
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| T |
19671661 |
ggatcaacattccttaatgcacaccaaacaggagtgttacacttaaatccagacccaaatgcaatttgccaaatcctatcaccttttcatactcttcctt |
19671760 |
T |
|
| Q |
152 |
tagcttcacaataagacaattcataccaaacagaacttgatgatgtgttgccatatctatatagtgtcattcttgaaggctccatatgaaaatca |
246 |
Q |
| |
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||||||||||||| | ||| ||||||||||||||||| ||| ||||| ||||||||||| |||||||| |||||||||| | ||||||||| |
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| T |
19671761 |
tagcttcacaatatgccaactcataccaaacagaactacttgaagtgttaccatatctataaagtgtcatctttgaaggctctaattgaaaatca |
19671855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 179
Target Start/End: Complemental strand, 15239718 - 15239601
Alignment:
| Q |
62 |
tcttcaaagcataccaaacagcagtattaaccttaaatccagatccaaaagccatttgccaaatcttatgtccctttttaactctccccttagcttcaca |
161 |
Q |
| |
|
||||||| || | |||||||||| ||||| |||||| ||||| ||||| || ||||||||| | ||| || ||||||| ||||| ||||||||| |
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|
| T |
15239718 |
tcttcaatgctttccaaacagcactattacacttaaaaccagaaccaaatgcaatttgccaagttctatcaccttttttaatcctccctttagcttcagt |
15239619 |
T |
|
| Q |
162 |
ataagacaattcatacca |
179 |
Q |
| |
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||||| |||||||||||| |
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|
| T |
15239618 |
ataagccaattcatacca |
15239601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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