View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13035_high_3 (Length: 477)
Name: NF13035_high_3
Description: NF13035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13035_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Original strand, 10238690 - 10239137
Alignment:
| Q |
18 |
caccacccccgaaaacttcggcattggattcccaatcgccgcgtaaataaacctgtgtttcttccccaaaaactcattgtttatcactgccaaatcaaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10238690 |
caccacccccgaaaacttcggcattggattcccaatcgccgcgtaaataaacctgtgtttcttccccaaaaactcattgtttatcactgccaaatcaaga |
10238789 |
T |
|
| Q |
118 |
tttcttgctgataacggttgtcttgttactatccccgtttcgacgttaattctcactttctcaatcatttcatgaataagctccaatctctccatcatat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10238790 |
tttcttgctgataacggttgtcttgttactatccccgtttcgacgttaattctcactttctcaatcatttcatgaataagctccaatctctccatcatat |
10238889 |
T |
|
| Q |
218 |
gctccacgcagagaatattcggtgcaactattgtcactgttttcccatcttcctcatcccatgcgtttatcaaatgcataatattaagcccaggaacatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10238890 |
gctccacgcagagaatattcggtgcaactattgtcactgttttcccatcttcctcatcccatgcgtttatcaaatgcataatattaagcccaggaacatc |
10238989 |
T |
|
| Q |
318 |
aaaccacttcatcttcgactcgttatcagcataacgaggtagaattccaatccttggaaccttcgatggatccgaccttacgggggaaccaccgaaaatc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||| |
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| T |
10238990 |
aaaccacttcatcttcgactcgttatcagcataacgaggtagaattccgatccttggaactttcgatggatcggaccttaccggggaaccaccgaaaatc |
10239089 |
T |
|
| Q |
418 |
atgtcaagaggattaatttcaagctgtatatcagcgaacacagcgtat |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10239090 |
atgtcaagaggattaatttcaagctgtatatcagcgaacaaagcgtat |
10239137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 461
Target Start/End: Original strand, 10229910 - 10230353
Alignment:
| Q |
18 |
caccacccccgaaaacttcggcattggattcccaatcgccgcgtaaataaacctgtgtttcttccccaaaaactcattgtttatcactgccaaatcaaga |
117 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| || |||| |||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10229910 |
caccacccccgaaaactttggcattggattcccaatcgctgcataaacaaacctactcttcttccccaaaaaatcattgtttatcactgccaaatcaaga |
10230009 |
T |
|
| Q |
118 |
tttcttgctgataacggttgtcttgttactatccccgtttcgacgttaattctcactttctcaatcatttcatgaataagctccaatctctccatcatat |
217 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||||||| |||||||||| |||| ||||||||||| || |
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| T |
10230010 |
tttcttgctgataatggttgtcttgttactaaccccgtttcgacattaatcctcactttctcaatcatggcatgaataaggtccattctctccatcacat |
10230109 |
T |
|
| Q |
218 |
gctccacgcagagaatattcggtgcaactattgtcactgttttcccatcttcctcatcccatgcgtttatcaaatgcataatattaagcccaggaacatc |
317 |
Q |
| |
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||| ||| | | |||||||| ||| || | |||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| |
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| T |
10230110 |
gctgcactgacaaaatattcgttgctaccaatgtcactgttcccccatcttcctcatcccatgcgtttatcgtatgcataatattaaaccctggaacatc |
10230209 |
T |
|
| Q |
318 |
aaaccacttcatcttcgactcgttatcagcataacgaggtagaattccaatccttggaaccttcgatggatccgaccttacgggggaaccaccgaaaatc |
417 |
Q |
| |
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||||||||||||||| ||||||| || ||||||||||||||||||||| ||||||| ||| || ||||||||||| || || || ||||||||||||||| |
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| T |
10230210 |
aaaccacttcatcttggactcgtcattagcataacgaggtagaattccgatccttgaaactttagatggatccgatctcaccggagaaccaccgaaaatc |
10230309 |
T |
|
| Q |
418 |
atgtcaagaggattaatttcaagctgtatatcagcgaacacagc |
461 |
Q |
| |
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||| |||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
10230310 |
atgccaagaggattcatttcaagctgtatatcagcgaacacagc |
10230353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 465
Target Start/End: Complemental strand, 10255918 - 10255468
Alignment:
| Q |
18 |
caccacccccgaaaacttcggcattggattcccaatcgccgcgtaaataaacctgtgtttcttccccaaaaactcattgtttatcactgccaaatcaaga |
117 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||| ||||| |||| |||||| | |||||||||| | | ||| |||||||| || ||||| || |
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| T |
10255918 |
caccaccccagaaatcttcggcattggattcccaattgccgcataaacaaacctattcttcttccccatataatcaccatttatcaccgcgaaatccagg |
10255819 |
T |
|
| Q |
118 |
tttcttgctgataacggttgtcttgttactatccccgtttcgacgttaattctcactttctcaatcatttcatgaataagctccaatctctccatcatat |
217 |
Q |
| |
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|||| || ||||| |||||||||| ||| ||||| |||| | || || | || |||||||||||| |||||| ||||| | |||||||||| ||| |
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| T |
10255818 |
tttcgcgccgataatggttgtcttgatacaatcccagttttaatatttatctttaccttctcaatcattgcatgaactagctcaagtctctccatcgtat |
10255719 |
T |
|
| Q |
218 |
gctccacgcagagaatattcggtgcaactattgtcactgttttc---ccatcttcctcatcccatgcgtttatcaaatgcataatattaagcccaggaac |
314 |
Q |
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| T |
10255718 |
gctcaatggagagaacatttggagcaattagtgtcacagtttcctcatcatcttccccatcccatgagtttatcgcgtgcataatattaaaccctggcac |
10255619 |
T |
|
| Q |
315 |
atcaaaccacttcatcttcgactcgttatcagcataacgaggtagaattccaatccttggaaccttcgatggatccgaccttacgggggaaccaccgaaa |
414 |
Q |
| |
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||||||||| |||||||||||||| | | |||||| | ||||||||||| ||||||| |||||| || ||||| || | ||| || ||||||||| || |
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| T |
10255618 |
atcaaaccatttcatcttcgactcatcactagcatatctcggtagaattccgatccttgaaacctttgaaggatcggaacctaccggagaaccaccggaa |
10255519 |
T |
|
| Q |
415 |
atcatgtcaagaggattaatttcaagctgtatatcagcgaacacagcgtat |
465 |
Q |
| |
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||||||||||||||||| ||| ||||||| ||||| | |||||||||||| |
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|
| T |
10255518 |
atcatgtcaagaggattcattccaagctgaatatccgtaaacacagcgtat |
10255468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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