View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13035_high_4 (Length: 429)
Name: NF13035_high_4
Description: NF13035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13035_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 166 - 411
Target Start/End: Complemental strand, 3077802 - 3077562
Alignment:
| Q |
166 |
tgctttcttgtgcgttgtgtgaagtcgatacggaaaaatgaactcacctctttgtgcattgctcggtagcgagaggggtttggttggagttgtttaagtg |
265 |
Q |
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| T |
3077802 |
tgctttcttgtgcgttgtgtgaagtcgatacggaaaaatgaactcacctctctgtgcattgcttggtagcgagaggggtttggttggagttgtttaagtg |
3077703 |
T |
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| Q |
266 |
ggttgattactcgtttattatgcttcaaaatgtctttaatcattgggcgtgttggaacgtggggaggttttaacaagaaggtggttaagggtcttaggct |
365 |
Q |
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| T |
3077702 |
ggtcaattactcgtttattatgcttcaaaatgtctttaatcattgggcgtgttggaacg-ctggaggtttt----agaaagtggttaagggtcttaggct |
3077608 |
T |
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| Q |
366 |
cattcggcattcaactatttgggtgatttagaaggcgaggaatgaa |
411 |
Q |
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| T |
3077607 |
catttggcatgcaactatttgggtgatttggacggcgaagaatgaa |
3077562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 3077923 - 3077829
Alignment:
| Q |
12 |
agagaacaattggagtgtggaggagaag---gtgtttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttt |
103 |
Q |
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| T |
3077923 |
agagaacaattggagtgtagaggagaagagggtgtttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttt |
3077829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 44692722 - 44692825
Alignment:
| Q |
49 |
caactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttttgcttgatcgtatcccgacgcggtttaatcttagtaggaggaatg |
148 |
Q |
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| T |
44692722 |
caactttggaaaagcccggctccgtcaaaagtggtggccctttcttggaaagttttgcttgatcgtattccgacgcggtggaatcttcgtagaaggaatg |
44692821 |
T |
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| Q |
149 |
ccct |
152 |
Q |
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|||| |
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| T |
44692822 |
ccct |
44692825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 15316226 - 15316260
Alignment:
| Q |
52 |
ctttggaaaagtccggctccgtctaaggtggtggc |
86 |
Q |
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| T |
15316226 |
ctttggaaaagtccggctccgtctaaggttgtggc |
15316260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 34866509 - 34866382
Alignment:
| Q |
13 |
gagaacaattggagtgtggaggagaag---gtgtttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttttgcttg |
109 |
Q |
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| T |
34866509 |
gagaacaattggagtgtggaggagttgagagtgtttctccaactttggaaaagcccggccccctcaaaagtggtggccctttcttggaaagtcttgcttg |
34866410 |
T |
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| Q |
110 |
atcgtatcccgacgcggtttaatcttag |
137 |
Q |
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| T |
34866409 |
atcgtattccgtcgcgattgaatcttag |
34866382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 14248813 - 14248764
Alignment:
| Q |
48 |
ccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtgga |
97 |
Q |
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| T |
14248813 |
ccaaatttggaagagtccggctccgtctaaggcggtggctctttcttgga |
14248764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 5008743 - 5008679
Alignment:
| Q |
43 |
tttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttttgct |
107 |
Q |
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| T |
5008743 |
tttacgcaactttggaagaatccggctcctttgaaggtggtggcactctcttggaaggttttgct |
5008679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 47337409 - 47337317
Alignment:
| Q |
43 |
tttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttttgcttgatcgtatcccgacgcggtttaatctt |
135 |
Q |
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| T |
47337409 |
tttagccaagtttggaagagcccggctccttctaaggtggtggcgctctcttggagatctttgcttaatcgtataccgacccgtttgaatctt |
47337317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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