View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13035_low_14 (Length: 244)
Name: NF13035_low_14
Description: NF13035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13035_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 34418695 - 34418924
Alignment:
| Q |
1 |
cgtgtaactgggtagcgaatcacatcaataatggatccaacttgtgcatccttgttttccacgtagctaattaggttgtattcaagatcacttgttgann |
100 |
Q |
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| T |
34418695 |
cgtgtaactgggtagcgaatcacatcaataatggatccaacttgtgcatccttgttttccacgtagctaattaggttgtattcaagatcacttgttgatt |
34418794 |
T |
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| Q |
101 |
nnnnngaatttgatacctcttcatcaagtgcgaggacaactccgtctggaaggtgtttcccattgaaagaagcaatggtggacatgagtgtagtcgcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34418795 |
tttttgaatttgatacctcttcatcaagtgcgaggacaactccgtctgggaggtgtttcccattgaaagaagcaatggtggacatgagtgtagtcgcttc |
34418894 |
T |
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| Q |
201 |
gtttattcttcctcgaacaaggtaccatct |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34418895 |
gtttattcttcctcgaacaaggtaccatct |
34418924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 34430944 - 34431173
Alignment:
| Q |
1 |
cgtgtaactgggtagcgaatcacatcaataatggatccaacttgtgcatccttgttttccacgtagctaattaggttgtattcaagatcacttgttgann |
100 |
Q |
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|||||||||| ||| ||||||||||| | |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34430944 |
cgtgtaactgagtaacgaatcacatctacaatggatccaacttgtgcatccttattttccacgtagttaattaggttgtattcaagatcacttgttgatt |
34431043 |
T |
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| Q |
101 |
nnnnngaatttgatacctcttcatcaagtgcgaggacaactccgtctggaaggtgtttcccattgaaagaagcaatggtggacatgagtgtagtcgcttc |
200 |
Q |
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||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| | ||| ||||| |
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| T |
34431044 |
tgtttgaatttgatacttcttcatcgagtgagaggacaactccgtctggaaggtgtttcccattgaaataagcaatagtggacatgagcgcagttgcttc |
34431143 |
T |
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| Q |
201 |
gtttattcttcctcgaacaaggtaccatct |
230 |
Q |
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|||||||||||||||||| ||||||||||| |
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| T |
34431144 |
gtttattcttcctcgaacgaggtaccatct |
34431173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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