View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13035_low_15 (Length: 234)
Name: NF13035_low_15
Description: NF13035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13035_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 41686121 - 41686339
Alignment:
| Q |
1 |
atatgagtaaatctaatttttagatatttagtttaaattgaaattcaccgtgtattattcttgtgttttgttcttacgttgtgaacttgtgttaatttag |
100 |
Q |
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| T |
41686121 |
atatgagtaaatctaatttttagatatttattttaaattgaaattcaccgcgtattattcttgtgttttgttcttacgttgtgaacttgtgttaatttag |
41686220 |
T |
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| Q |
101 |
aggccaaggtggttttcagctgttgatcaagagttactgcaggccagatcagagattgaaaatgcaccagttgtcaatgatgttggaaacctttatactc |
200 |
Q |
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| T |
41686221 |
aggccaaggtggttttcagctgttgatcaagagttactgcaggccagatcagagattgaaaatgcaccagttgtcactgatgttggaaacctttatactc |
41686320 |
T |
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| Q |
201 |
ccctttttcgcaacatttc |
219 |
Q |
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| T |
41686321 |
ccctttttcgcaacatttc |
41686339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 56 - 209
Target Start/End: Original strand, 51205797 - 51205946
Alignment:
| Q |
56 |
tattcttgtgttttgttcttacgttgtgaacttgtgttaatttagaggccaaggtggttttcagctgttgatcaagagttactgcaggccagatcagaga |
155 |
Q |
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| T |
51205797 |
tattcttgtgttctgttcttattttgctaacttgtgtt----tagaggccaaggtggtcttcagctgttgatcaagagctactgctggccagatcagaga |
51205892 |
T |
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| Q |
156 |
ttgaaaatgcaccagttgtcaatgatgttggaaacctttatactcccctttttc |
209 |
Q |
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| T |
51205893 |
ttgaaaatgttccagttgtaactgatgttggaaatctttatgctcctctttttc |
51205946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 52907 - 52985
Alignment:
| Q |
96 |
tttagaggccaaggtggttttcagctgttgatcaagagttactgcaggccagatcagagattgaaaatgcaccagttgt |
174 |
Q |
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|||||| ||| |||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |
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| T |
52907 |
tttagaagccgaggtggttttcaaatgttgatcaagagttactacaggcaagatcagagattgaaaatgcaccaattgt |
52985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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