View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13035_low_16 (Length: 227)
Name: NF13035_low_16
Description: NF13035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13035_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 9570903 - 9570797
Alignment:
| Q |
3 |
gtgttcagagtctgagactgaggtatgttctgttccaacactttggtttgtttaaggtttcatgaatttgtgctgttgtctgtgggccctgaatatatag |
102 |
Q |
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| T |
9570903 |
gtgttcagagtctgatactgaggtatgttctgttccaacactttggtttgtttaaggtttcatgaatttgtgttgttgtctgtgggccctgaatatatag |
9570804 |
T |
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| Q |
103 |
catgtgt |
109 |
Q |
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||||||| |
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| T |
9570803 |
catgtgt |
9570797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 9562805 - 9562699
Alignment:
| Q |
1 |
ctgtgttcagagtctgagactgaggtatgttctgttccaacactttggtttgtttaaggtttcatgaatttgtgctgttgtctgtgggccctgaatatat |
100 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9562805 |
ctgtgttcagagtctgagcctgaggtatgttccgttccaacactttggcttgtttaaagtttcatgaatttgtgttgttgtctgtgggccctgaatatat |
9562706 |
T |
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| Q |
101 |
agcatgt |
107 |
Q |
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||||||| |
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| T |
9562705 |
agcatgt |
9562699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 9562592 - 9562551
Alignment:
| Q |
180 |
attaattcaaactataaacaaaccactttttcgtggaagttt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
9562592 |
attaattcaaactataaacaaaccactttttcgtggaagttt |
9562551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 9570686 - 9570645
Alignment:
| Q |
180 |
attaattcaaactataaacaaaccactttttcgtggaagttt |
221 |
Q |
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| T |
9570686 |
attaattcaaactataaataaaccactttttcgtggaagttt |
9570645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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