View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13035_low_2 (Length: 677)
Name: NF13035_low_2
Description: NF13035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13035_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 1 - 658
Target Start/End: Complemental strand, 293679 - 293019
Alignment:
| Q |
1 |
aatgcattgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
293679 |
aatgcattgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaact |
293580 |
T |
|
| Q |
101 |
tagtggtcaccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggatcggaaagaattatgttcccgaccgcacccttttgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
293579 |
tagtggtcaccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggatcggaaagaattatgttcccgaccgcacccttttgga |
293480 |
T |
|
| Q |
201 |
tcctgactattgccccccagaactctatgtactcccagaagaaacaccaagtcccccaccggcgccaattgctgcgttcttttcaccaatcctatggcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
293479 |
tcctgactattgccccccagaactctatgtactcccagaagaaacaccaagtcccccaccggcgccaattgctgcgttcttttcaccaatcctatggcag |
293380 |
T |
|
| Q |
301 |
gtttattttatataccctaattatgtcgtgaaaatatgattatttcatatattgcattggaagtgctaaagttgtgttatgtaattatcgttgcagttaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
293379 |
gtttattttatataccctaattatgtcgtgaaaatatgattatttcatatattgcattggaagtgctaaagttgtgttatgtaattatcgttgcagttaa |
293280 |
T |
|
| Q |
401 |
acagccctgatctgtttgatacttattcggctgggattgtactccttcaaatggcaataccaaccttaaggtctcctgctgctttgaagaattttaattt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
293279 |
acagccctgatctgtttgatacttattcggctgggattgtactccttcaaatggcaataccaaccttaaggtctcctgctgctttgaagaattttaattt |
293180 |
T |
|
| Q |
501 |
ggaaataaaaacctgtggatatgatttgaaaaaatggagggaa-tatac--tcgcctcaggcccaacc-tccaaattcttgatagtgaatctggtagagg |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||| |||||| | || | || |||||||||||||||||||||||||||||| |
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|
| T |
293179 |
ggaaataaaaacctgtggatatgatttgaaaaaatggaggtaattatacctccgcctc-gaccgacccaaccaaattcttgatagtgaatctggtagagg |
293081 |
T |
|
| Q |
597 |
ttgggacttggcaacaaagcttatatctgaaagaggtcccgtaagaagaggacgtttatctg |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
293080 |
ttgggacttggcaacaaagcttatatctgaaagaggtcccgtaagaagaggacgtttatctg |
293019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 3e-59; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 390 - 658
Target Start/End: Original strand, 27493424 - 27493692
Alignment:
| Q |
390 |
gttgcagttaaacagccctgatctgtttgatacttattcggctgggattgtactccttcaaatggcaataccaaccttaaggtctcctgctgctttgaag |
489 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| ||||| ||||| ||||||||| | ||||| |||||||||||||||||||||| |||||||||||| |
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|
| T |
27493424 |
gttgcagttaaacagtcctgatctctttgatatgtattctgctggaattgtactcttgcaaattgcaataccaaccttaaggtctcaagctgctttgaag |
27493523 |
T |
|
| Q |
490 |
aattttaatttggaaataaaaacctgtggatatgatttgaaaaaatggagggaatatactcgcctcaggcccaacctccaaattcttgatagtgaatctg |
589 |
Q |
| |
|
||||| ||||||||||| | || | ||||||||||||||| ||||||||||| | ||||||| | | | | ||| ||||||| ||||||||||| |||| |
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|
| T |
27493524 |
aatttcaatttggaaatgaggacatatggatatgatttgaacaaatggagggactctactcgcatgaagtctaacttccaaatccttgatagtgattctg |
27493623 |
T |
|
| Q |
590 |
gtagaggttgggacttggcaacaaagcttatatctgaaagaggtcccgtaagaagaggacgtttatctg |
658 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| || ||||| || ||| ||||||| | |||||||||| |
|
|
| T |
27493624 |
gtagaggttgggacttagcatcaaagcttatctccaaaagaagttccgaaagaagaaggcgtttatctg |
27493692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 390 - 658
Target Start/End: Original strand, 27500082 - 27500350
Alignment:
| Q |
390 |
gttgcagttaaacagccctgatctgtttgatacttattcggctgggattgtactccttcaaatggcaataccaaccttaaggtctcctgctgctttgaag |
489 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| ||||| ||||| ||||||||| | ||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
27500082 |
gttgcagttaaacagtcctgatctctttgatatgtattctgctggaattgtactcttgcaaattgcaataccaaccttaaggtctcaagctgctttgaag |
27500181 |
T |
|
| Q |
490 |
aattttaatttggaaataaaaacctgtggatatgatttgaaaaaatggagggaatatactcgcctcaggcccaacctccaaattcttgatagtgaatctg |
589 |
Q |
| |
|
||||| ||||||||||| | || | ||||||||||||||| ||||||||||| | ||||||| | | | | ||| ||||||| ||||||||||| |||| |
|
|
| T |
27500182 |
aatttcaatttggaaatgaggacatatggatatgatttgaacaaatggagggactctactcgcatgaagtctaacttccaaatccttgatagtgattctg |
27500281 |
T |
|
| Q |
590 |
gtagaggttgggacttggcaacaaagcttatatctgaaagaggtcccgtaagaagaggacgtttatctg |
658 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| || ||||| || ||| ||||||| | |||||||||| |
|
|
| T |
27500282 |
gtagaggttgggacttagcatcaaagcttatctccaaaagaagttccgaaagaagaaggcgtttatctg |
27500350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 390 - 658
Target Start/End: Original strand, 27514874 - 27515142
Alignment:
| Q |
390 |
gttgcagttaaacagccctgatctgtttgatacttattcggctgggattgtactccttcaaatggcaataccaaccttaaggtctcctgctgctttgaag |
489 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| ||||| ||||| ||||||||| | ||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
27514874 |
gttgcagttaaacagtcctgatctctttgatatgtattctgctggaattgtactcttgcaaattgcaataccaaccttaaggtctcaagctgctttgaag |
27514973 |
T |
|
| Q |
490 |
aattttaatttggaaataaaaacctgtggatatgatttgaaaaaatggagggaatatactcgcctcaggcccaacctccaaattcttgatagtgaatctg |
589 |
Q |
| |
|
||||| ||||||||||| | || | ||||||||||||||| ||||||||||| | ||||||| | | | | ||| ||||||| ||||||||||| |||| |
|
|
| T |
27514974 |
aatttcaatttggaaatgaggacatatggatatgatttgaacaaatggagggactctactcgcatgaagtctaacttccaaatccttgatagtgattctg |
27515073 |
T |
|
| Q |
590 |
gtagaggttgggacttggcaacaaagcttatatctgaaagaggtcccgtaagaagaggacgtttatctg |
658 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| || ||||| || ||| ||||||| | |||||||||| |
|
|
| T |
27515074 |
gtagaggttgggacttagcatcaaagcttatctccaaaagaagttccgaaagaagaaggcgtttatctg |
27515142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 27492368 - 27492546
Alignment:
| Q |
1 |
aatgcattgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaact |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||| || || ||||| ||||| || ||| ||||||| |||||| |
|
|
| T |
27492368 |
aatgcattgatcatcaagcaaataatgcgccaaatcattacatctcttaagaaaattcacgacactggcatcgttcacagggatgtaaagccttccaact |
27492467 |
T |
|
| Q |
101 |
tagtggtcaccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggatcggaaagaattatgt |
179 |
Q |
| |
|
| || || || ||| | ||||||||||||||||||||||||||||| |||||||||||| | || |||||||||||||| |
|
|
| T |
27492468 |
tggttgttacaaaaaaagggcagattaaactcattgattttggtgcagcaacagaccttagaattggaaagaattatgt |
27492546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 27495080 - 27495236
Alignment:
| Q |
8 |
tgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaacttagtggt |
107 |
Q |
| |
|
|||||||||||||||| |||||||| ||| |||| |||||||||||||||||||| || |||| |||||| || ||||||||||| | ||||| || || |
|
|
| T |
27495080 |
tgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgt |
27495179 |
T |
|
| Q |
108 |
caccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggat |
164 |
Q |
| |
|
|| ||||| || | ||| ||| || ||||||||||||| |||||||| ||| |||| |
|
|
| T |
27495180 |
tacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacagatcttaggat |
27495236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 27501738 - 27501894
Alignment:
| Q |
8 |
tgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaacttagtggt |
107 |
Q |
| |
|
|||||||||||||||| |||||||| ||| |||| |||||||||||||||||||| || |||| |||||| || ||||||||||| | ||||| || || |
|
|
| T |
27501738 |
tgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgt |
27501837 |
T |
|
| Q |
108 |
caccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggat |
164 |
Q |
| |
|
|| ||||| || | ||| ||| || ||||||||||||| |||||||| ||| |||| |
|
|
| T |
27501838 |
tacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacagatcttaggat |
27501894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 27516530 - 27516686
Alignment:
| Q |
8 |
tgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaacttagtggt |
107 |
Q |
| |
|
|||||||||||||||| |||||||| ||| |||| |||||||||||||||||||| || |||| |||||| || ||||||||||| | ||||| || || |
|
|
| T |
27516530 |
tgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgt |
27516629 |
T |
|
| Q |
108 |
caccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggat |
164 |
Q |
| |
|
|| ||||| || | ||| ||| || ||||||||||||| |||||||| ||| |||| |
|
|
| T |
27516630 |
tacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacagatcttaggat |
27516686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 27507565 - 27507711
Alignment:
| Q |
18 |
gcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaacttagtggtcaccaaacag |
117 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||| || |||| |||||| || ||||||||||| | ||||| || || || |||| |
|
|
| T |
27507565 |
gcaaataatgcgccagataattacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgttacaaaacta |
27507664 |
T |
|
| Q |
118 |
gggcagattaaactcattgattttggtgctgcaacagaccttcggat |
164 |
Q |
| |
|
|| | ||||||| || ||||||||||||| |||||||| ||| |||| |
|
|
| T |
27507665 |
ggtcggattaaattcgttgattttggtgcagcaacagatcttaggat |
27507711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 431 - 539
Target Start/End: Original strand, 27496007 - 27496115
Alignment:
| Q |
431 |
ctgggattgtactccttcaaatggcaataccaaccttaaggtctcctgctgctttgaagaattttaatttggaaataaaaacctgtggatatgatttgaa |
530 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||| | || | || ||||||||| || |
|
|
| T |
27496007 |
ctggaattgtgctccttccaatggcaataccaaccttgaggtctccggttgctttgaagaatttcaatttggaaatgaggacatatgtatatgattttaa |
27496106 |
T |
|
| Q |
531 |
aaaatggag |
539 |
Q |
| |
|
|||||||| |
|
|
| T |
27496107 |
caaatggag |
27496115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 431 - 539
Target Start/End: Original strand, 27502665 - 27502773
Alignment:
| Q |
431 |
ctgggattgtactccttcaaatggcaataccaaccttaaggtctcctgctgctttgaagaattttaatttggaaataaaaacctgtggatatgatttgaa |
530 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||| | || | || ||||||||| || |
|
|
| T |
27502665 |
ctggaattgtgctccttccaatggcaataccaaccttgaggtctccggttgctttgaagaatttcaatttggaaatgaggacatatgtatatgattttaa |
27502764 |
T |
|
| Q |
531 |
aaaatggag |
539 |
Q |
| |
|
|||||||| |
|
|
| T |
27502765 |
caaatggag |
27502773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 431 - 476
Target Start/End: Original strand, 27517486 - 27517531
Alignment:
| Q |
431 |
ctgggattgtactccttcaaatggcaataccaaccttaaggtctcc |
476 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27517486 |
ctgggattgttctccttcaaatggcaatgccaaccttaaggtctcc |
27517531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 27508515 - 27508549
Alignment:
| Q |
436 |
attgtactccttcaaatggcaataccaaccttaag |
470 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27508515 |
attgtgctccttcaaatggcaataccaaccttaag |
27508549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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