View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13035_low_4 (Length: 447)
Name: NF13035_low_4
Description: NF13035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13035_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 164 - 431
Target Start/End: Original strand, 38244485 - 38244752
Alignment:
| Q |
164 |
gatgatgaaaatgaatacttctactacttcttctcatcttgatcttgatgtaggtttatcatcacaactacaagaactgccttctcaaactatcaattta |
263 |
Q |
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| T |
38244485 |
gatgatgaaaatgaatacttctactacttcttctcatcttgatcttcatgtaggcttatcatcacaactacaagaactgccttctcaaactatcaattta |
38244584 |
T |
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| Q |
264 |
tttgttactgatgttggggatattaacaagaatgataaaaggaagaagaagaagagcaatgaaaatatcgatgatggtaaaatccacagcctaccacaca |
363 |
Q |
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| T |
38244585 |
tttgttactgatgttagggatattaacaagaatgataaaaggaagaagaagaagagcaatgaaaatatcgatgatggtaaaattcacagcctaccacacg |
38244684 |
T |
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| Q |
364 |
agaaacatggaccatacccatgttcccaatgcaacaaaatatttgaaacttcacaaaaatttgctaat |
431 |
Q |
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| T |
38244685 |
agaaacatggaccatacccatgttcccaatgcaacaaaatatttgaaacatcacaaaaatttgctaat |
38244752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 190 - 431
Target Start/End: Original strand, 38260812 - 38261052
Alignment:
| Q |
190 |
cttcttctcatcttgatcttgatgtaggtttatcatcacaactacaagaactgccttctcaaactatcaatttatttgttactgatgttggggatattaa |
289 |
Q |
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| T |
38260812 |
cttcttctcatcttgatctccatgtaggcttatcatcacaatcacaagaactgccttctcaaacaattaatatttcagttgctgatgttggg-atgttaa |
38260910 |
T |
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| Q |
290 |
caagaatgataaaaggaagaagaagaagagcaatgaaaatatcgatgatggtaaaatccacagcctaccacacaagaaacatggaccatacccatgttcc |
389 |
Q |
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| T |
38260911 |
caagaacgatatgagaaagaagaagaagagaaatgaaaatattaatgatggaagaatccacagcctaccacacaagaaatatggaccatacccatgttca |
38261010 |
T |
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| Q |
390 |
caatgcaacaaaatatttgaaacttcacaaaaatttgctaat |
431 |
Q |
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| T |
38261011 |
aaatgcaacaaaatatttgaaacatcacaaaaatttgctaat |
38261052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 38244334 - 38244445
Alignment:
| Q |
13 |
ataattctggtagtcatgctccgggaatcaaaaaagcgatgctgattcttgaagctcagtttgggcatctgcaaacatcaacatcatcaattaatattaa |
112 |
Q |
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| T |
38244334 |
ataattttggtagtcatgctccgggaatcaaaaaagcgatgcagattcttgaagctcagtttggacatctgcaaacatcaacatcatcaattaatattaa |
38244433 |
T |
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| Q |
113 |
tgatgacatcat |
124 |
Q |
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| T |
38244434 |
tgatgacatcat |
38244445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 38260626 - 38260714
Alignment:
| Q |
13 |
ataattctggtagtcatgctccgggaatcaaaaaagcgatgctgattcttgaagctcagtttgggcatctgcaaacatcaacatcatca |
101 |
Q |
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| T |
38260626 |
ataattttggtagtcatgctccgggaatcctaaaagcaatggagattcttgaaactcagtttgggcatttgcatacatcaacgtcatca |
38260714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 401
Target Start/End: Complemental strand, 47285733 - 47285665
Alignment:
| Q |
333 |
gatgatggtaaaatccacagcctaccacacaagaaacatggaccatacccatgttcccaatgcaacaaa |
401 |
Q |
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| T |
47285733 |
gatgatggtagaatccacagtctacctcacaataaacatggaccgtacacgtgttcagagtgcaacaaa |
47285665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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