View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13035_low_9 (Length: 333)
Name: NF13035_low_9
Description: NF13035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13035_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 42225561 - 42225710
Alignment:
| Q |
3 |
gcagacgatttagttcctgctcaagatgccatttccttaatagaaagattttcatgtattttaaagactaagttgataaatttcatatacgttaaaaact |
102 |
Q |
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| T |
42225561 |
gcagacgatttagttcctgctcaagatgccatttccttaatagaaagattttcatgtattttaaagactaagttgataaatttcatatacgttaaaaact |
42225660 |
T |
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| Q |
103 |
acttattatattcatgtagtttaagaactaaatcaaaaacaaaatgatag |
152 |
Q |
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| T |
42225661 |
acttattatattcatgtagtttaagaactaaatcaaaaacaaaatgatag |
42225710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 223 - 315
Target Start/End: Original strand, 42225794 - 42225886
Alignment:
| Q |
223 |
aggaatttgttgaacaaaaacacacgtaccaatgtagtcggtgaggactcttccgtcggagaaacgaccggcaggtttgccgggaaaggtgat |
315 |
Q |
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| T |
42225794 |
aggaatttgttgaacaaaaacacacgtaccaatgtagtcggtgaggactcttccgtcggagaaacgaccggcaggtttgccgggaaaggtgat |
42225886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 42225724 - 42225765
Alignment:
| Q |
153 |
agaatgagtcaaaagcaaaaaacatctcacgattacccgtac |
194 |
Q |
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| T |
42225724 |
agaatgagtcaaaagcaaaaaacatctaacgataacacgtac |
42225765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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