View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13036_high_10 (Length: 395)
Name: NF13036_high_10
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13036_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 21 - 389
Target Start/End: Original strand, 42624595 - 42624963
Alignment:
| Q |
21 |
atatgaaaataccaaagccttcattgaagatactttgttatttattactgatacctgcatatctacataccagtattagatagaattctagaccatttac |
120 |
Q |
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| T |
42624595 |
atatgaaaataccaaagccttcattgaagatactttgttatttattactgatacctgcatatctacataccagtattagatagaattctagaccatttac |
42624694 |
T |
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| Q |
121 |
aattcctagtgagattttttctggcgtgctagattcggggtaggcccaaacataaagtctttgattttagcctacaaaatttaagccaaataaatggcct |
220 |
Q |
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| T |
42624695 |
aattcctagtgagattttttctggcgtgctagattcggggtaggcccaaacataaagtctttgattttagcctgcaaaatttaagccaaataaatggcct |
42624794 |
T |
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| Q |
221 |
ctgactctgaagtttctgttttgtctataaataaatctgtttaacaaaaaatgttcatgaatcaactgaatcaaattaataatcgtctcaaccaatgcga |
320 |
Q |
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| T |
42624795 |
ctgactctgaagtttctgttttgtctataaataaatctgtttaacaaaaaatgttcatgaatcaactgaatcaaattaataatcgtctcaaccaatgcga |
42624894 |
T |
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| Q |
321 |
tacaagaagggtagacagtgtagagtattgtagtatgtcgattcactcagataatcgtgttcatctcac |
389 |
Q |
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| T |
42624895 |
tacaagaagggtagacagtgtagagtattgtagtatgtcgatccattcagataatcgtgttcatttcac |
42624963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 35433166 - 35433101
Alignment:
| Q |
292 |
caaattaataatcgtctcaaccaatgcgatacaagaagggtagacagtgtagagtattgtagtatg |
357 |
Q |
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| T |
35433166 |
caaattaatgatcgtctcaaccacggagatgcaagaagggtggacagtgtggagtattgtcgtatg |
35433101 |
T |
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