View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13036_high_13 (Length: 372)
Name: NF13036_high_13
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13036_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 3 - 316
Target Start/End: Complemental strand, 44909270 - 44908954
Alignment:
| Q |
3 |
accacaaacaaagcaattaatgtcttttaattgattcatatttttattattcttgtcctttttctannnnnnnccgtacgcaaaaggaaattgaaaaagg |
102 |
Q |
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| T |
44909270 |
accacaaacaaagcaattaatgtcttttaattgattcatatttttattattcttgtccttttcctatttttttccgtacgcaaaaggaaattgaaaaagg |
44909171 |
T |
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| Q |
103 |
gaaaactcttggagaagctnnnnnnnnn---tattgaacaccaagnnnnnnngggaaatataccaataaatatatattaagattggcgtgtttgtaagag |
199 |
Q |
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| T |
44909170 |
gaaaactcttggagaagctaaaaaaaaaaaatattgaacaccaagaaaaaaagggaaacataccaataaatatatattaagattggcgtgtttgtaagag |
44909071 |
T |
|
| Q |
200 |
aaaataaaggcatgaaatacataatagtaattgtatacataggaaaaacatacatgtnnnnnnngcaggattgtaaaaagtgagtttgatgctgataaac |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44909070 |
aaaataaaggcatgaaatacataatagtaattgtatacataggaaaaacatacatgtaaaaaaagcaggattgtaaaaagtgagtttgatgctgataaac |
44908971 |
T |
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| Q |
300 |
atctctgtcatgaaaga |
316 |
Q |
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|||| |||||||||||| |
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| T |
44908970 |
atctttgtcatgaaaga |
44908954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 39137465 - 39137514
Alignment:
| Q |
16 |
caattaatgtcttttaattgattcatatttttattattcttgtccttttt |
65 |
Q |
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||||||||||||||||||||||| || ||||| |||||||| ||| |||| |
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| T |
39137465 |
caattaatgtcttttaattgattgattttttttttattcttctccctttt |
39137514 |
T |
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