View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13036_high_17 (Length: 290)
Name: NF13036_high_17
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13036_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 23 - 276
Target Start/End: Complemental strand, 42311955 - 42311700
Alignment:
| Q |
23 |
ctcacaaatggatggtatagaattttgtcaaaagactgtctaaccgtagcatttccatgcaagtgcatttgcaagtcctttaaatcatgtgtatccttag |
122 |
Q |
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| T |
42311955 |
ctcacaaatggatggcatagaattttgtcaaaagactgtctaaccgtagcatttccatgcaagtgcatttgcaagtcctttaaatcatgtgtatccttag |
42311856 |
T |
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| Q |
123 |
ctattttctatctttt--tggtcattgttttcttgcccttctagattctttctccccacttttttaatatgctaaatgcaaattgcctaatctttctatt |
220 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42311855 |
ctattttctatcttttcttggtcattgttttcttgcccttctagattctttctccccacttttttaatatgctaaatgcaaattgcctaatctttctatt |
42311756 |
T |
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| Q |
221 |
gaagtgggaaggatgattgactatgtaattagaaaggttgaggtctgcacattatt |
276 |
Q |
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||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
42311755 |
gaagtggcaaggatgattggctatgtaattataaaggttgaggtctgcacattatt |
42311700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 23 - 276
Target Start/End: Original strand, 47247458 - 47247712
Alignment:
| Q |
23 |
ctcacaaatggatggtatagaattttgtcaaaagactgtctaaccgtagcatttccatgcaagtgcatttgcaagtcctttaaatcatgtgtatccttag |
122 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47247458 |
ctcacaaatggatggcgtagaattttgtcaaaagactggctaaccgtagcatt-ccatgcaagtgcatttgcaagtcctttaaatcatgtgtatccttag |
47247556 |
T |
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| Q |
123 |
ctattttctatctttt--tggtcattgttttcttgcccttctagattctttctccccacttttttaatatgctaaatgcaaattgcctaatctttctatt |
220 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47247557 |
ctattttctatcttttcttggtcattgttttcttgcccttctagattctttctccccacttttttaatgtgctaaatgcaaattgcctaatctttctatt |
47247656 |
T |
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| Q |
221 |
gaagtgggaaggatgattgactatgtaattagaaaggttgaggtctgcacattatt |
276 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47247657 |
gaagtggcaaggatgattgactatgtaattagaaaggttgaggtctgcacattatt |
47247712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 41325837 - 41325723
Alignment:
| Q |
23 |
ctcacaaatggatggtatagaattttgtcaaaagactgtctaaccgtagcatttccatgcaagtgcatttgcaagtcctttaaatcatgtgtatccttag |
122 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41325837 |
ctcacaaatggatggcatagaattttgtcgaaagactgtctaaccgtagcatt-cgatgcaagtgcatttgcaagtactttaaatcatgtgtatccttag |
41325739 |
T |
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| Q |
123 |
ctattttctatctttt |
138 |
Q |
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|||||||||||||||| |
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| T |
41325738 |
ctattttctatctttt |
41325723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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