View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13036_high_19 (Length: 252)
Name: NF13036_high_19
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13036_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 15502377 - 15502243
Alignment:
| Q |
10 |
aagaatatgtggcaaacacgaatatcatatttatccaacgaagtagatacaaatattatattatctgcgttcataaatctcattaacatctctaatttct |
109 |
Q |
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| T |
15502377 |
aagaatatgtagcaagcacgaatatcatatttattcaacgaagtagatacaaacattatattatctgcgttcatgaatctcattaacatctctaatttct |
15502278 |
T |
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| Q |
110 |
ctattgtatatgctaaggaattaatatcatatggc |
144 |
Q |
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| T |
15502277 |
ctattgtatacgctaaggaattaatatcatatggc |
15502243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 15502209 - 15502117
Alignment:
| Q |
142 |
ggctattatgttaatgaatataagtgggtttataaaattacaaatacaactcttcatgtcacgccatttggcatgccctttgcataagtctcc |
234 |
Q |
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| T |
15502209 |
ggctattatgttaatgaatataggtgggtttataaaattacatatacaactcttcatgtcacgccatttggcatgccctttgtataagtctcc |
15502117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 43427712 - 43427759
Alignment:
| Q |
27 |
acgaatatcatatttatccaacgaagtagatacaaatattatattatc |
74 |
Q |
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| T |
43427712 |
acgaatatcatatttgtcgaacggagtagacacaaatattatattatc |
43427759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 34833376 - 34833410
Alignment:
| Q |
22 |
caaacacgaatatcatatttatccaacgaagtaga |
56 |
Q |
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| T |
34833376 |
caaacacgaatatcatatttatccaacgaggtaga |
34833410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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