View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13036_high_2 (Length: 608)
Name: NF13036_high_2
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13036_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 6e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 46026483 - 46026269
Alignment:
| Q |
1 |
tgggcgaggcggatgatactagttaaagaaataagagaagtataattttcgtgttgaatagaacaatttttaaattttttaagaagttaaattcataatt |
100 |
Q |
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| T |
46026483 |
tgggtgaggctgatgatactagttaaagaaataagagaagtataattttcgtgttgaatagaacaatttttaaatttttttagaagttaaattcataatt |
46026384 |
T |
|
| Q |
101 |
tcaattcagcactttcatactaaaacatatgctctaggaactcgttaacctaagtttaca-gggccttttaaccttagatataataataaaaaacttgaa |
199 |
Q |
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| T |
46026383 |
ccaattcagcaatttcatactaaaacatatgctttaggaactcgttaacctaagtttataggggccttttaaccttagatataataataaaaaatttgaa |
46026284 |
T |
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| Q |
200 |
tggttgtttgtccta |
214 |
Q |
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| T |
46026283 |
tggttgtttgtccta |
46026269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 27928044 - 27928012
Alignment:
| Q |
173 |
cttagatataataataaaaaacttgaatggttg |
205 |
Q |
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| T |
27928044 |
cttagatataataataaaaaatttgaatggttg |
27928012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 51893826 - 51893866
Alignment:
| Q |
165 |
cttttaaccttagatataataataaaaaacttgaatggttg |
205 |
Q |
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| T |
51893826 |
cttttaactttagatataataataaaaaattcgaatggttg |
51893866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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