View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13036_high_20 (Length: 249)
Name: NF13036_high_20
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13036_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 49276897 - 49277127
Alignment:
| Q |
1 |
cctgaaccttgtcttaggttcacacctcgccacaatccatgaaacccttcaagttttagatcaaactcnnnnnnnnnnnnnnnnnnnngttaacaaagtc |
100 |
Q |
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| T |
49276897 |
cctgaaccttgtcttaggttcacacctcgccacaatccatgaaacccttcaagttttagatcaaactccttcttcttcttcttctttcgttaacaaagtc |
49276996 |
T |
|
| Q |
101 |
acctgggaagatgtcattaagatggccgaacaagtttctaaacaagccaccacaggtactttcaactctttcacttttccattcaatctgtctctttatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49276997 |
acctgggaagatgtcattaagatggccgaacaagtttctaaacaagccaccacaggtactttcaactctttcacttttccattcaatctgtctctttatt |
49277096 |
T |
|
| Q |
201 |
tgaatatcataagctgtttctataagtgatt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
49277097 |
tgaatatcataagctgtttctataagtgatt |
49277127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 50484715 - 50484636
Alignment:
| Q |
93 |
acaaagtcacctgggaagatgtcattaagatggccgaacaagtttctaaacaagccaccacaggtactttcaactctttc |
172 |
Q |
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| T |
50484715 |
acaaagtaacatgggaagatgtcattaagatggctgaacaagtttccaaacaagccaccacaggtactttcaactctttc |
50484636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 41637866 - 41637787
Alignment:
| Q |
93 |
acaaagtcacctgggaagatgtcattaagatggccgaacaagtttctaaacaagccaccacaggtactttcaactctttc |
172 |
Q |
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| T |
41637866 |
acaaagtaacctgggaagatgtcattaagatggctgaacaagtttccaaacaagccaccacaggtactttcaactctttc |
41637787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 48499732 - 48499796
Alignment:
| Q |
91 |
taacaaagtcacctgggaagatgtcattaagatggccgaacaagtttctaaacaagccaccacag |
155 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48499732 |
taacaaagtaacctgggaagatgtcattaagatggttgaacaagtttctaaacaagccaccacag |
48499796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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