View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13036_high_21 (Length: 246)
Name: NF13036_high_21
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13036_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 698450 - 698538
Alignment:
| Q |
144 |
tgttcttgctaatgctatgtagtgttctctattttatagccacaattggagttatggttgaagtcattatgatgcataggctctaggtg |
232 |
Q |
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| T |
698450 |
tgttcttgctaatgctatgtagtgttctctattttatagccacaattggagttatggttgaagtcattatgatgcataggctctaggtg |
698538 |
T |
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Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 766748 - 766836
Alignment:
| Q |
144 |
tgttcttgctaatgctatgtagtgttctctattttatagccacaattggagttatggttgaagtcattatgatgcataggctctaggtg |
232 |
Q |
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| T |
766748 |
tgttcttgctaatgctatgtagtgttctctattttatagccacaattggagttatggttgaagtcattatgatgcataggctctaggtg |
766836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 698309 - 698391
Alignment:
| Q |
1 |
gtaggtgttcttcatctgatcttatatgtagaagtagtggtccatgagctaacaaactaattaaatataagaaaataaagatggt |
85 |
Q |
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| T |
698309 |
gtaggtgttcttcatct--tcttatatgtagtagtagtggtccatgagctaacaaactaattaaatataagaaaataaagatggt |
698391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 766607 - 766689
Alignment:
| Q |
1 |
gtaggtgttcttcatctgatcttatatgtagaagtagtggtccatgagctaacaaactaattaaatataagaaaataaagatggt |
85 |
Q |
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| T |
766607 |
gtaggtgttcttcatct--tcttatatgtagtagtagtggtccatgagctaacaaactaattaaatataagaaaataaagatggt |
766689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 36963485 - 36963397
Alignment:
| Q |
144 |
tgttcttgctaatgctatgtagtgttctctattttatagccacaattggagttatggttgaagtcattatgatgcataggctctaggtg |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36963485 |
tgttcttgctaatgctatgtagtgttctctattttatagccacaattggagttatggttgaagtcattatgatgcataggctctaggtg |
36963397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 36963632 - 36963550
Alignment:
| Q |
1 |
gtaggtgttcttcatctgatcttatatgtagaagtagtggtccatgagctaacaaactaattaaatataagaaaataaagatggt |
85 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36963632 |
gtaggtgttcttcatct--tcttatatgtagtagtagtggtccatgagctaacaaactaattaaatataagaaaataaagatggt |
36963550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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