View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13036_high_23 (Length: 241)

Name: NF13036_high_23
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13036_high_23
NF13036_high_23
[»] chr2 (13 HSPs)
chr2 (24-225)||(11136895-11137096)
chr2 (71-225)||(11149175-11149329)
chr2 (74-225)||(11145244-11145395)
chr2 (65-225)||(11110084-11110244)
chr2 (75-225)||(11155562-11155712)
chr2 (69-225)||(10794043-10794199)
chr2 (65-225)||(11118088-11118248)
chr2 (70-203)||(11095635-11095768)
chr2 (70-134)||(11104094-11104158)
chr2 (144-225)||(11171239-11171320)
chr2 (82-176)||(11200121-11200215)
chr2 (142-225)||(11177243-11177326)
chr2 (77-176)||(11191968-11192067)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 11136895 - 11137096
Alignment:
Q  24 agtaaataaattttgatttttaatatttgtattatgttgtctatgattgtaacagggttgtgatgcatcagttttattgaacaaaactgataccattgtg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11136895 agtaaataaattttgatttttaatatttgtattatgttgtctatgattgtaacagggttgtgatgcatcagttttattgaacaaaactgataccattgtg 11136994  T
Q  124 agtgaacaagaagctttcccaaatatcaactctctaagaggtttggatgttgtaaaccgaattaaaacagaagtggaaaaggcttgtcctaacacagttt 223  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| || | ||| ||||||| |||||||||||||||||||||||||||||    
T  11136995 agtgaacaagaagctttcccaaatatcaactctctacgaggtttggatgttgtgaatcaaatcaaaacagcagtggaaaaggcttgtcctaacacagttt 11137094  T
Q  224 ct 225  Q
    ||    
T  11137095 ct 11137096  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 71 - 225
Target Start/End: Original strand, 11149175 - 11149329
Alignment:
Q  71 tgtaacagggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctaagaggtttgga 170  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| ||||| |  |||||  |||||||||| ||    
T  11149175 tgtaacagggttgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttaga 11149274  T
Q  171 tgttgtaaaccgaattaaaacagaagtggaaaaggcttgtcctaacacagtttct 225  Q
    |||||| || | ||| |||||||  ||||||||||||||||||||||||||||||    
T  11149275 tgttgtgaatcaaatcaaaacagctgtggaaaaggcttgtcctaacacagtttct 11149329  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 225
Target Start/End: Original strand, 11145244 - 11145395
Alignment:
Q  74 aacagggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctaagaggtttggatgt 173  Q
    ||||||||||||||||||||||||| ||||| || |||| ||| ||||| ||||||||||| ||||| ||||| |  |||||  | ||||||||||||||    
T  11145244 aacagggttgtgatgcatcagttttgttgaataacactgctactattgtcagtgaacaagatgcttttccaaacagaaactcattgagaggtttggatgt 11145343  T
Q  174 tgtaaaccgaattaaaacagaagtggaaaaggcttgtcctaacacagtttct 225  Q
    ||| || | ||| ||||||| ||| ||||||||||| |||||||||||||||    
T  11145344 tgtgaatcaaatcaaaacagcagtagaaaaggcttgccctaacacagtttct 11145395  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 11110084 - 11110244
Alignment:
Q  65 tatgattgtaacagggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctaagagg 164  Q
    |||||||| ||||||||||||||||||||||||| ||||| || || |  || ||||||||||||||||| ||||| ||||||||||||||  |||||||    
T  11110084 tatgattgaaacagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagagg 11110183  T
Q  165 tttggatgttgtaaaccgaattaaaacagaagtggaaaaggcttgtcctaacacagtttct 225  Q
     ||||||||| | || | ||| || ||  |||||||||| ||||| ||||| | |||||||    
T  11110184 attggatgttatcaatcaaatcaagactaaagtggaaaaagcttgccctaatagagtttct 11110244  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 11155562 - 11155712
Alignment:
Q  75 acagggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctaagaggtttggatgtt 174  Q
    |||||| |||||||| || ||||| |||||||| |||| ||| || || || |||||| ||||||| ||||||| ||||||| |||||||||||||||||    
T  11155562 acagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgtt 11155661  T
Q  175 gtaaaccgaattaaaacagaagtggaaaaggcttgtcctaacacagtttct 225  Q
    ||||| |  || ||||| |   | ||||  |||||||||||||||||||||    
T  11155662 gtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttct 11155712  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 225
Target Start/End: Complemental strand, 10794199 - 10794043
Alignment:
Q  69 attgtaacagggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctaagaggtttg 168  Q
    |||| |||||||||| ||||||||  ||||  ||||||| |||| ||| || ||||| |||| | ||||| ||||||||||||||||  |||||||||||    
T  10794199 attgaaacagggttgcgatgcatccattttgctgaacaacactgctactatcgtgagcgaactacaagctctcccaaatatcaactccataagaggtttg 10794100  T
Q  169 gatgttgtaaaccgaattaaaacagaagtggaaaaggcttgtcctaacacagtttct 225  Q
     | ||||| || || || || ||||| |||||||| ||||| ||||| |||||||||    
T  10794099 caagttgtgaatcgtatcaagacagacgtggaaaaagcttgccctaatacagtttct 10794043  T

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Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 11118088 - 11118248
Alignment:
Q  65 tatgattgtaacagggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctaagagg 164  Q
    |||||||| | ||||||||||||||||||||||| ||||| ||||||  ||| |||| |||||||||||| |||   |||||||| |||||  ||||| |    
T  11118088 tatgattgaatcagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaag 11118187  T
Q  165 tttggatgttgtaaaccgaattaaaacagaagtggaaaaggcttgtcctaacacagtttct 225  Q
     ||||||||| | || |  |||||||| || |||||||| | ||||||||| | |||||||    
T  11118188 attggatgttatcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttct 11118248  T

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Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 11095635 - 11095768
Alignment:
Q  70 ttgtaacagggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctaagaggtttgg 169  Q
    |||| |||||||||||||| ||||||||| |||||||| ||| ||||||| || ||||| ||||| ||  | ||||| || |||||  |||| |||||||    
T  11095635 ttgtgacagggttgtgatggatcagttttgttgaacaacactaataccatagtaagtgagcaagatgcacttccaaacataaactcattaaggggtttgg 11095734  T
Q  170 atgttgtaaaccgaattaaaacagaagtggaaaa 203  Q
    |||||||||||| ||| || |||| ||| |||||    
T  11095735 atgttgtaaaccaaatcaagacagcagttgaaaa 11095768  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 11104094 - 11104158
Alignment:
Q  70 ttgtaacagggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaaga 134  Q
    |||| |||||| ||||||| ||||||||| |||||||| |||||||| |||||||||||||||||    
T  11104094 ttgtgacagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaaga 11104158  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 11171239 - 11171320
Alignment:
Q  144 aaatatcaactctctaagaggtttggatgttgtaaaccgaattaaaacagaagtggaaaaggcttgtcctaacacagtttct 225  Q
    ||||| ||||||  |||||||||| |||||||| || | ||| ||||||| ||||||||| |||||||||||||| ||||||    
T  11171239 aaataacaactcaataagaggtttagatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttct 11171320  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 11200121 - 11200215
Alignment:
Q  82 tgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctaagaggtttggatgttgt 176  Q
    ||||||||||| |||||  ||||||| || |  || || || || |||||| ||||||| ||||||||||||||  |||||||||||||||||||    
T  11200121 tgtgatgcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccataagaggtttggatgttgt 11200215  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 11177243 - 11177326
Alignment:
Q  142 ccaaatatcaactctctaagaggtttggatgttgtaaaccgaattaaaacagaagtggaaaaggcttgtcctaacacagtttct 225  Q
    ||||||| ||||||  ||||||||||||| ||  ||||||  || |||||||  |||||||| |||||||||||||| ||||||    
T  11177243 ccaaataacaactccataagaggtttggacgtgataaaccagatcaaaacagcggtggaaaatgcttgtcctaacactgtttct 11177326  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 11192067 - 11191968
Alignment:
Q  77 agggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctaagaggtttggatgttgt 176  Q
    ||||||||||||||||| | || |||||  |  ||||||| || |||||||| |||| |||||| |||||||  |||||  |||||||||||||| ||||    
T  11192067 agggttgtgatgcatcactcttgttgaatgactctgatactatcgtgagtgagcaaggagctttgccaaatagaaactcaataagaggtttggatattgt 11191968  T

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