View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13036_high_27 (Length: 233)

Name: NF13036_high_27
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13036_high_27
NF13036_high_27
[»] chr6 (2 HSPs)
chr6 (6-218)||(8035268-8035480)
chr6 (1-48)||(12180698-12180745)
[»] chr7 (6 HSPs)
chr7 (1-137)||(5288023-5288159)
chr7 (1-48)||(23180058-23180105)
chr7 (1-48)||(9230356-9230403)
chr7 (1-48)||(23804671-23804718)
chr7 (1-48)||(24276400-24276447)
chr7 (1-48)||(43727951-43727998)
[»] chr4 (1 HSPs)
chr4 (1-48)||(31944571-31944618)
[»] chr8 (4 HSPs)
chr8 (1-48)||(13152567-13152614)
chr8 (1-48)||(24333669-24333716)
chr8 (1-48)||(28846576-28846623)
chr8 (1-45)||(27190726-27190770)
[»] chr5 (5 HSPs)
chr5 (1-48)||(3055437-3055484)
chr5 (1-48)||(11852670-11852717)
chr5 (1-48)||(23244743-23244790)
chr5 (23-77)||(19790233-19790287)
chr5 (1-45)||(27168971-27169015)
[»] chr1 (2 HSPs)
chr1 (1-48)||(14498853-14498900)
chr1 (1-44)||(30559182-30559225)
[»] scaffold0002 (1 HSPs)
scaffold0002 (5-48)||(435528-435571)
[»] chr2 (1 HSPs)
chr2 (1-48)||(12539529-12539576)
[»] chr3 (2 HSPs)
chr3 (1-47)||(3857050-3857096)
chr3 (1-48)||(51261934-51261981)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 8035480 - 8035268
Alignment:
Q  6 agtaaaataatcttataagctcgtgagaaagaagtgttaccaaacaagtctattttgctcatatgaacttataatctatgctatccgctaaaaactcaaa 105  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||| ||    
T  8035480 agtaaaataatcttatatgctcgtgagaaagaattgttaccaaacaagtctattttgatcatatgaacttataagctacgttatccgctaaaaactcgaa 8035381  T
Q  106 aactgacctcgccaaacaacgactaaaatatgatatcatagtatacacaaagtcataataatcttgtgacggagaagattacaaattttggtctgtttgg 205  Q
    ||||||| |||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8035380 aactgacatcgccaaacaagacctaaattatgatatcatagtatacacaaagtcataataatcttgtgacggagaaaattacaaattttggtctgtttgg 8035281  T
Q  206 atacataacttat 218  Q
    ||| | |||||||    
T  8035280 ataaacaacttat 8035268  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 12180745 - 12180698
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa 48  Q
    ||||| ||||||||||||||||||| ||||||||| || |||||||||    
T  12180745 aagctggtaaaataatcttataagcccgtgagaaaaaattgttaccaa 12180698  T

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Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 5288023 - 5288159
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaaacaagtctattttgctcatatgaacttataatctatgctatccgctaaaaac 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5288023 aagctagtaaaataatcttacaagctcgtgagaaagaagtgttaccaaacaagtctattttgctcatatgaacttataatctatgctatccgctaaaaac 5288122  T
Q  101 tcaaaaactgacctcgccaaacaacgactaaaatatg 137  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  5288123 tcaaaaactgacctcaccaaacaacgcctaaaatatg 5288159  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23180105 - 23180058
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa 48  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||    
T  23180105 aagctagtaaaataatcttataagctcgtgagaaataattgttaccaa 23180058  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9230356 - 9230403
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa 48  Q
    ||||||||||||||||||||||||| ||| ||||| || |||||||||    
T  9230356 aagctagtaaaataatcttataagcccgttagaaaaaattgttaccaa 9230403  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23804718 - 23804671
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa 48  Q
    |||||||||||||||||||||||| | |||||||||||  ||||||||    
T  23804718 aagctagtaaaataatcttataagtttgtgagaaagaatggttaccaa 23804671  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 24276447 - 24276400
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa 48  Q
    ||||||||||| ||||||||||| ||||| |||||||| |||||||||    
T  24276447 aagctagtaaattaatcttataacctcgttagaaagaattgttaccaa 24276400  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 43727951 - 43727998
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa 48  Q
    |||||||||||||||||||||||||   |||||||||| |||||||||    
T  43727951 aagctagtaaaataatcttataagcctatgagaaagaattgttaccaa 43727998  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31944571 - 31944618
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa 48  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  31944571 aagctagtaaaataatcttataagctcgtgagaaagaattgttaccaa 31944618  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13152614 - 13152567
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa 48  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||    
T  13152614 aagctagtaaaataatcttataagcccgtgagaaagaattgttaccaa 13152567  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24333669 - 24333716
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa 48  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||    
T  24333669 aagctagtaaaataatcttataagcccgtgagaaagaattgttaccaa 24333716  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 28846576 - 28846623
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa 48  Q
    ||||||||||||||||||||||||  |||||||||||| |||||||||    
T  28846576 aagctagtaaaataatcttataagtccgtgagaaagaattgttaccaa 28846623  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27190726 - 27190770
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttac 45  Q
    ||||||||||||||||||||||||| || ||||||||| ||||||    
T  27190726 aagctagtaaaataatcttataagcccgcgagaaagaattgttac 27190770  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 3055437 - 3055484
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa 48  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||    
T  3055437 aagctagtaaaataatcttataagcccgtgagaaagaattgttaccaa 3055484  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11852670 - 11852717
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa 48  Q
    ||||||||||||||||||||||||  |||||||||||| | |||||||    
T  11852670 aagctagtaaaataatcttataagtccgtgagaaagaattattaccaa 11852717  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23244790 - 23244743
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa 48  Q
    |||||||||||||||||||||||||   |||||||||| |||||||||    
T  23244790 aagctagtaaaataatcttataagccaatgagaaagaattgttaccaa 23244743  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 19790233 - 19790287
Alignment:
Q  23 agctcgtgagaaagaagtgttaccaaacaagtctattttgctcatatgaacttat 77  Q
    |||| ||||||||  | ||||||||||||| ||||||||| ||||||||||||||    
T  19790233 agcttgtgagaaatgattgttaccaaacaaatctattttggtcatatgaacttat 19790287  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27169015 - 27168971
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttac 45  Q
    ||||||||||||||||||||||||| | ||||||| || ||||||    
T  27169015 aagctagtaaaataatcttataagcccatgagaaataattgttac 27168971  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 14498853 - 14498900
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa 48  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||    
T  14498853 aagctagtaaaataatcttataagctcgtgagaaagatttgttaccaa 14498900  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 30559225 - 30559182
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgtta 44  Q
    |||||||||||||| ||||||||||||| ||||||||| |||||    
T  30559225 aagctagtaaaatattcttataagctcgcgagaaagaattgtta 30559182  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 435571 - 435528
Alignment:
Q  5 tagtaaaataatcttataagctcgtgagaaagaagtgttaccaa 48  Q
    ||||||||||||||||||||||||||||||| || |||||||||    
T  435571 tagtaaaataatcttataagctcgtgagaaaaaattgttaccaa 435528  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 12539529 - 12539576
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa 48  Q
    |||||||||||| |||||||||||| |||||||||||| |||||||||    
T  12539529 aagctagtaaaagaatcttataagcccgtgagaaagaattgttaccaa 12539576  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3857096 - 3857050
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttacca 47  Q
    ||||||||||||||||||||||||| ||||||||| || ||||||||    
T  3857096 aagctagtaaaataatcttataagcccgtgagaaataattgttacca 3857050  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 51261934 - 51261981
Alignment:
Q  1 aagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa 48  Q
    |||||||||||||||| | |||||||||||| |||||| |||||||||    
T  51261934 aagctagtaaaataatataataagctcgtgaaaaagaattgttaccaa 51261981  T

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