View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13036_high_8 (Length: 413)
Name: NF13036_high_8
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13036_high_8 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 399
Target Start/End: Complemental strand, 30612726 - 30612349
Alignment:
| Q |
12 |
atgaagtctaccacgaaatcaaaagacaaaagaaactccttaaaaaaccttacaataagtactcttttgtcaaaaagacttggtcacaccacattgtcac |
111 |
Q |
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| T |
30612726 |
atgaagtctaccatgaaattaaaagacaaaagaaactccttaaaaaaccttacaataagtattcttttgttaaaaacacttggacacaccacattgtcac |
30612627 |
T |
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| Q |
112 |
attaggattaggagagccgaagttcataaaggtgtaatgatgtgggtgccaagaatgtagattatttcaaaaaaccccaaggtctcaactttggttgaaa |
211 |
Q |
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| T |
30612626 |
attagaa------gagccgaagttcataaaggtgtaatgatgtggg---caagaatgtagattgtttcaaaaa-ccccaaggtctcaactttggttgaaa |
30612537 |
T |
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| Q |
212 |
agcaaattgattagcatctaaaagtgccttacatatcttctaagattgttcaatgcactcaattgtaggtttatcccctaccttcatg--nnnnnnnnaa |
309 |
Q |
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| T |
30612536 |
accaaattgattagcatctaaaagtgccttacaaa--ttctaagattgttcaatgcactcaattgtaggtttatctcctaccttcatgttttttttttaa |
30612439 |
T |
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| Q |
310 |
ggaagggggcacatctcaacgctacttctcaatttgaaaaacccttgttttatcacttactcccacaagttgggacaggtttgttgtttt |
399 |
Q |
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| T |
30612438 |
ggaaggggccacatctcaacgctacttttcaatctggaaaacctttgttttatcacttacttccacaagttgggaaaggtttgttgtttt |
30612349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 161
Target Start/End: Complemental strand, 22850324 - 22850281
Alignment:
| Q |
118 |
attaggagagccgaagttcataaaggtgtaatgatgtgggtgcc |
161 |
Q |
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| T |
22850324 |
attaggagagttgaagttcctaaaggtgtaatgatgtgggtgcc |
22850281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 221945 - 222018
Alignment:
| Q |
12 |
atgaagtctaccacgaaatcaaaagacaaaagaaactccttaaaaa-accttacaataagtactcttttgtcaa |
84 |
Q |
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| T |
221945 |
atgaagtttaccatgaaatcaaaagacaagaaaaactcatttaagagaccttacaaaaagtactcttttgtcaa |
222018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 24071387 - 24071305
Alignment:
| Q |
129 |
cgaagttcataaaggtgtaatgatgtgggtg-ccaagaatgt--agattatttcaaaaaaccccaaggtctcaactttggttga |
209 |
Q |
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| T |
24071387 |
cgaagttcctaaagttgtaatgatgtgggtgcccaagaatgttgatattgtctcaaaaaa-ccaaaggtctcaacttcggttga |
24071305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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