View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13036_high_9 (Length: 403)
Name: NF13036_high_9
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13036_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 57 - 385
Target Start/End: Original strand, 21288612 - 21288936
Alignment:
| Q |
57 |
ttcgaatacgatcaaatattctttaaagaaagatatcaaagagccaaattgcaattttgtacgttagtgcgtgatacgaccagaccaacttggtgcatga |
156 |
Q |
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| T |
21288612 |
ttcgaatacgatcaaatattctttaaagaaagatatcaaagagtcaaattgcaattttgtacgttagtgcgtgatacgacca-----acttggtgcatga |
21288706 |
T |
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| Q |
157 |
ttcannnnnnnncttc-atggatgtacaacattattcatatcgatttgaagtgattttattcgacaaagaagattaagaatgactacttgctacaagatg |
255 |
Q |
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| T |
21288707 |
ttcatttttttttttccatggatgtacaacattattcatatcgatttgaagtgattttattcaacaaagaagattaagaatgactacttgctacaatatg |
21288806 |
T |
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| Q |
256 |
aggaaaatccaaaacagacttgtagaggcaaaaatttcatcggcaaagtcatgtttttaattgaaaatgcaagccggtcaggttttggtatgcaacaaat |
355 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21288807 |
aggaaaatccaaaacaaacttgcagaggcaaaaatttcattggcaaagtcatgtttttaattgaaaatgcaagccgaccaggttttggtatgcaacaaat |
21288906 |
T |
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| Q |
356 |
tgaagtcttcttagaaaaaatcgatgtatt |
385 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
21288907 |
tgaagtcttcttagaaaaaatcgatgtatt |
21288936 |
T |
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