View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13036_low_15 (Length: 364)
Name: NF13036_low_15
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13036_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 37045566 - 37045898
Alignment:
| Q |
17 |
tacttaccttcatttttaaccattcttgtttgaattcagctgaatca---tcactattggtaacttgagagaaatatctaaaaggtgctctaacttgtac |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37045566 |
tacttaccttcatttttaaccattcttgtttgaattcagctgaatcatcatcactattggtaacttgagagaaatatctaaaaggtgctctaacttgtac |
37045665 |
T |
|
| Q |
114 |
attatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggtaaaaacagaacagccatcatcagaaacataa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37045666 |
attatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggtaaaaacagaacagccatcatcagaaacataa |
37045765 |
T |
|
| Q |
214 |
caagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggtggttcaagtacaggatctgctgttgtcacaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37045766 |
caagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggtggttcaagtacaggatctgctgttgtcacaa |
37045865 |
T |
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| Q |
314 |
ataaatccacacgtggaagctcatgcactctat |
346 |
Q |
| |
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| T |
37045866 |
acaaatccacacgtggaagctcatgcactctat |
37045898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 37036219 - 37036549
Alignment:
| Q |
10 |
attatactacttaccttcatttttaaccattcttgtttgaattcagctgaatca---tcactattggtaacttgagagaaatatctaaaaggtgctctaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37036219 |
attatactacttaccttcatttttaaccattcttgtttgaattcagctgaatcatcatcactattggtaacttgagagaaatatctaaaaggtgctctaa |
37036318 |
T |
|
| Q |
107 |
cttgtacattatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggtaaaaacagaacagccatcatcaga |
206 |
Q |
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| T |
37036319 |
cttgtatattatacttcttacagaaaggtacccaaaacttggcaaatttagaagcttccaaaagaccatagaaggtaaaaacagaacagccatcatcaga |
37036418 |
T |
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| Q |
207 |
aacataacaagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggtggttcaagtacaggatctgctgtt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37036419 |
aacataacaagctagcttattagctggataatcaagagccaatagagacaaaacagtgttcaatgtgatgattggtggttcaagtacaggatctgctgtt |
37036518 |
T |
|
| Q |
307 |
gtcacaaataaatccacacgtggaagctcat |
337 |
Q |
| |
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| T |
37036519 |
gtcacaaacaaatccacacatggaagctcat |
37036549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 83 - 314
Target Start/End: Original strand, 37011605 - 37011836
Alignment:
| Q |
83 |
agaaatatctaaaaggtgctctaacttgtacattatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggt |
182 |
Q |
| |
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||||||||||||| ||||||||| ||||||||| ||||||||||| || || ||||||| | ||||||||| | |||||||| |||| |||||||||| |
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| T |
37011605 |
agaaatatctaaatggtgctctacattgtacattgtacttcttacaaaatggtacccaaatttcagcaaatttggcagcttccacaagagcatagaaggt |
37011704 |
T |
|
| Q |
183 |
aaaaacagaacagccatcatcagaaacataacaagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggt |
282 |
Q |
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|| | ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || || || || |||| |||||| |||||| |
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| T |
37011705 |
aagagttgaacacccatcatcagaaacataacaagctagcttattagcaggataatcaagtgccaacaatgataacactgtattcactgtgattattggt |
37011804 |
T |
|
| Q |
283 |
ggttcaagtacaggatctgctgttgtcacaaa |
314 |
Q |
| |
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||||| || || |||||||||||||| ||||| |
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| T |
37011805 |
ggttctagcactggatctgctgttgttacaaa |
37011836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 91 - 314
Target Start/End: Original strand, 37027703 - 37027926
Alignment:
| Q |
91 |
ctaaaaggtgctctaacttgtacattatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggtaaaaacag |
190 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||| ||||| ||||||| ||||||||||||||| ||||||| ||| |||| ||||||| | | |
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| T |
37027703 |
ctaaaaggtgctctaacttgcacattgtatttcttacaaaaaggtacccaaagcttagcaaatttagaggcttccacaagggcataaaaggtaagaggtg |
37027802 |
T |
|
| Q |
191 |
aacagccatcatcagaaacataacaagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggtggttcaag |
290 |
Q |
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|||| ||||||||||||||||| || |||||||| || |||||||||||||||||||| | ||||| || || |||| |||||| ||||||||||| || |
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| T |
37027803 |
aacatccatcatcagaaacatagcatgctagcttgtttgctggataatcaagtgccaacaatgacaacactgtattcactgtgattattggtggttctag |
37027902 |
T |
|
| Q |
291 |
tacaggatctgctgttgtcacaaa |
314 |
Q |
| |
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| |||||||| ||||||||||| |
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| T |
37027903 |
ccctggatctgccgttgtcacaaa |
37027926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 85 - 323
Target Start/End: Complemental strand, 17656384 - 17656146
Alignment:
| Q |
85 |
aaatatctaaaaggtgctctaacttgtacattatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggtaa |
184 |
Q |
| |
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|||||||||||||| || |||| ||||||||| ||||| ||||| || || |||||| || |||||||| ||||||| |||| |||||||| | | |
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| T |
17656384 |
aaatatctaaaaggagccctaatttgtacattgtactttttacaaaatggtacccaatgttttgcaaattttgaagctttgtgaagagcatagaagatta |
17656285 |
T |
|
| Q |
185 |
aaacagaacagccatcatcagaaacataacaagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggtgg |
284 |
Q |
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| |||||| |||||||||||||| |||||||||||||| | || ||| ||||||||||| ||||| || ||||||||||| | ||||||||||| ||| |
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| T |
17656284 |
gaggagaacaaccatcatcagaaacgtaacaagctagcttgtgagatgggtaatcaagtgctaatagtgataaaacagtgtttattgtgatgattgctgg |
17656185 |
T |
|
| Q |
285 |
ttcaagtacaggatctgctgttgtcacaaataaatccac |
323 |
Q |
| |
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||| | || |||||||||||||||||||||||||| |
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| T |
17656184 |
ttctaactcatcgtctgctgttgtcacaaataaatccac |
17656146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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