View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13036_low_16 (Length: 357)
Name: NF13036_low_16
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13036_low_16 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 45793976 - 45793623
Alignment:
| Q |
1 |
ataaccagataggagcttttaggaagcttcgtcatttcttgttattattttaacttgtaaataaatatggattattcacaatatatgaatcccgttgcca |
100 |
Q |
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| T |
45793976 |
ataaccagataggagcttttaggaagcttcatcatttcttgttattattttaacttgtaaataaatatggattattcacaatatatgattcccgttgcca |
45793877 |
T |
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| Q |
101 |
taaaacaataaacttgagtgtgtatgaacatcataattaataaccttaaaaaata--aagagatctaaagaagctgtatgatctaaaataacttgagtaa |
198 |
Q |
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| T |
45793876 |
taaaacaataaacttgagtgtgtatgaacatcataattaataaccttaaaaaatagaaagagatctaaagaagctgtatgatctaaaataacttgagtaa |
45793777 |
T |
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| Q |
199 |
atatggattgcttaacaaaatcctttaacgtcaaaaacacgagctgtatgatccatagaagccgagacaatgtaattacgatttgcagacaaagaaagag |
298 |
Q |
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| T |
45793776 |
atatggattgcttaacaaaatcctttaacgtcaaaaacacgagctgtatgatccatagaagccgagacaatgtaatcacgatttgcagacaaagaaagag |
45793677 |
T |
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| Q |
299 |
attgaatgggttcagagtgccctctgaactgaatgttcttacacattcaccagaccgac |
357 |
Q |
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| T |
45793676 |
attgaatgggttcagagtgccctc-----tgaatgttcttacacattcaccagatcgac |
45793623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 206 - 357
Target Start/End: Original strand, 43816759 - 43816905
Alignment:
| Q |
206 |
ttgcttaacaaaatcctttaacgtcaaaaacacgagctgtatgatccatagaagccgagacaatgtaattacgatttgcagacaaagaaagagattgaat |
305 |
Q |
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|||||||||||| ||||||||| || |||||||||||||| ||||| | |||||||||||||| ||| | |||| ||||||||||||||||||||||| |
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| T |
43816759 |
ttgcttaacaaactcctttaacatcgaaaacacgagctgtgtgatctaaagaagccgagacaaggtactcttgattagcagacaaagaaagagattgaat |
43816858 |
T |
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| Q |
306 |
gggttcagagtgccctctgaactgaatgttcttacacattcaccagaccgac |
357 |
Q |
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| T |
43816859 |
gctttcagagtgccct-----ctaaatgttctgacacattcaccagatcgac |
43816905 |
T |
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