View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13036_low_17 (Length: 312)

Name: NF13036_low_17
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13036_low_17
NF13036_low_17
[»] chr7 (1 HSPs)
chr7 (1-293)||(47426891-47427186)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 47426891 - 47427186
Alignment:
Q  1 tgtgagaattgttctaggattattattcatgtgattcttcttctt---caattgattttctcgttttgaaattgatcgacttcttgaataatatgccatt 97  Q
    |||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47426891 tgtgagaattgttctaggattattattcatgtgattctccttctttttcaattgattttctcgttttgaaattgatcgacttcttgaataatatgccatt 47426990  T
Q  98 gagtcatactttctgcttttaacatctagtggaccacttctacttctcataacctccaacatttcttccatgctcatattctttgaatactatgcaacaa 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47426991 gagtcatactttctgcttttaacatctagtggaccacttctacttctcataacctccaacatttcttccatgctcatattctttgaatactattcaacaa 47427090  T
Q  198 ttaataaccatattatatatagttattgatagataaatgaataacatctttgtttagataaataacaaataacttgtgtttatgtcatgaccactt 293  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47427091 ttaataaccatattatatatagttattgatatataaatgaataacatctttgtttagataaataacaaataacttgtgtttatgtcatgagcactt 47427186  T

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