View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13036_low_19 (Length: 276)

Name: NF13036_low_19
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13036_low_19
NF13036_low_19
[»] chr4 (12 HSPs)
chr4 (15-258)||(8040558-8040801)
chr4 (15-216)||(8035174-8035375)
chr4 (19-258)||(9137865-9138104)
chr4 (15-141)||(8417442-8417568)
chr4 (18-216)||(8411849-8412041)
chr4 (155-216)||(8417597-8417658)
chr4 (16-118)||(8404893-8404995)
chr4 (16-133)||(8358202-8358319)
chr4 (160-216)||(46191029-46191085)
chr4 (170-216)||(8405056-8405102)
chr4 (15-116)||(8419501-8419602)
chr4 (76-118)||(43142329-43142371)
[»] chr2 (1 HSPs)
chr2 (15-206)||(33085012-33085192)
[»] chr7 (1 HSPs)
chr7 (160-216)||(5477606-5477662)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 8040801 - 8040558
Alignment:
Q  15 aatatccatttaataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattg 114  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8040801 aatatccatataataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattg 8040702  T
Q  115 gagttgtttatagtgcacaagcctttttatccagatagggaacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagag 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8040701 gagttgtttatagtgcacaagcctttttatccagatagggaacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcagtgcctagag 8040602  T
Q  215 ttcaacttggtcgcttttgtttttgattattttgaggttgatgc 258  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
T  8040601 ttcaagttggtagcttttgtttttgattattttgaggttgatgc 8040558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 8035375 - 8035174
Alignment:
Q  15 aatatccatttaataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||   ||||||||||||||||| |||||||    
T  8035375 aatatccatttaataatgtctcctattcattcgaattgtgcaggtattcctcttaaatccaacttcgaagaatttgcaacctccacgctttgttagattg 8035276  T
Q  115 gagttgtttatagtgcacaagcctttttatccagatagggaacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagag 214  Q
    ||||||||||||||||||||| ||   ||| ||  |  ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  8035275 gagttgtttatagtgcacaaggctccatatgcatgtgaggaacaagaaataatggaagtagtggaacacttgcttcaaaacactactttaatgcctagag 8035176  T
Q  215 tt 216  Q
    ||    
T  8035175 tt 8035174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 9138104 - 9137865
Alignment:
Q  19 tccatttaataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattggagt 118  Q
    |||||||||||||||||| |||||||||||  | |||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| || ||||||||    
T  9138104 tccatttaataatgtctcttattcattcgaggtttgcaggaattcctcttaaatcccatttcgaagaaagtgcaacctccacgctttgttaaattggagt 9138005  T
Q  119 tgtttatagtgcacaagcctttttatccagatagggaacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctaga---gt 215  Q
    || |||||||||||  ||     ||| |||||| | ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||   ||    
T  9138004 tgcttatagtgcac--gc----atatgcagataagaaacaagaaataatggaaatagtggaacacttgcttcaaaacactacttcaatgactagagttgt 9137911  T
Q  216 tcaacttg---gtcgcttttgtttttgattattttgaggttgatgc 258  Q
    |||| |||   || | |||||||||| |||||||||||||||||||    
T  9137910 tcaagttggacgtaggttttgtttttcattattttgaggttgatgc 9137865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 8417442 - 8417568
Alignment:
Q  15 aatatccatttaataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattg 114  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  8417442 aatatccatttaataatgtctgctattcatttgaattgtgcaggaattccgcttaaatcccatttcgaagaaagcgcaacctccacgctttgttagattg 8417541  T
Q  115 gagttgtttatagtgcacaagcctttt 141  Q
    ||||||||||||||| |||||| ||||    
T  8417542 gagttgtttatagtgtacaagcatttt 8417568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 8411849 - 8412041
Alignment:
Q  18 atccatttaataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattggag 117  Q
    |||||||||||||||| ||||||| |||| |||||||||||| |||| ||||||| ||| |||||| ||    ||||||||||  |||| ||||||||||    
T  8411849 atccatttaataatgtatcctatttattcaaattgtgcaggacttcctcttaaatacaacttcgaaaaactttcaacctccacagtttgttagattggag 8411948  T
Q  118 ttgtttatagtgcacaagcctttttatccagatagggaacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagagtt 216  Q
    ||| || ||||||||   | ||      || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8411949 ttgcttgtagtgcacgcacatt------caaataaggaacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagagtt 8412041  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 8417597 - 8417658
Alignment:
Q  155 aacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagagtt 216  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  8417597 aacaagaaataatggaagtagtggaacacttgcttcaaaacacgacttcaatgcctagagtt 8417658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 8404893 - 8404995
Alignment:
Q  16 atatccatttaataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattgg 115  Q
    |||||||||| | |||||||| |||||| || |||||||||||||  ||    |||||  ||||||||||||| ||||||||||| ||||||||||||||    
T  8404893 atatccatttgaaaatgtctcatattcactctaattgtgcaggaacaccttgcaaatcttatttcgaagaaagtgcaacctccacactttgctagattgg 8404992  T
Q  116 agt 118  Q
    |||    
T  8404993 agt 8404995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 8358319 - 8358202
Alignment:
Q  16 atatccatttaataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattgg 115  Q
    |||||||||||| ||||||||| ||||| || |||||||||||| |  || |  ||||| ||||| |||||||| ||||||||| ||||| ||||| ||     
T  8358319 atatccatttaaaaatgtctccaattcactctaattgtgcaggagtggcgttctaatcccatttcaaagaaagctcaacctccatgcttttctagactga 8358220  T
Q  116 agttgtttatagtgcaca 133  Q
    ||| ||| ||||||||||    
T  8358219 agtcgttcatagtgcaca 8358202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 46191085 - 46191029
Alignment:
Q  160 gaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagagtt 216  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||    
T  46191085 gaaataatggaagtagtggaacaattgcttcaaaacactatttcaatgcctaaagtt 46191029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 8405056 - 8405102
Alignment:
Q  170 aagtagtgaaacacttgcttcaaaacactacttcaatgcctagagtt 216  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  8405056 aagtagtggaacacttgcttcaaaacactactccaatgcctagagtt 8405102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 8419501 - 8419602
Alignment:
Q  15 aatatccatttaataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattg 114  Q
    |||||| |||| | ||||||||||||||| |  |||||||||||||  ||    |||||  ||||| ||||||| ||||||||||| |||||||||||||    
T  8419501 aatatcaatttgaaaatgtctcctattcactataattgtgcaggaacaccttgcaaatcttatttcaaagaaagtgcaacctccacactttgctagattg 8419600  T
Q  115 ga 116  Q
    ||    
T  8419601 ga 8419602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 43142371 - 43142329
Alignment:
Q  76 atttcgaagaaagcgcaacctccacgctttgctagattggagt 118  Q
    ||||| ||||||| ||||||||||| |||||||||||||||||    
T  43142371 atttcaaagaaagtgcaacctccacactttgctagattggagt 43142329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 33085012 - 33085192
Alignment:
Q  15 aatatccatttaataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattg 114  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||     ||  ||       |  |||||||    
T  33085012 aatatccatttaataatgtctcttattcattcgaattgtgcaggaattcctcttaaatccaacttcgaagaat----aatgtc-------tcttagattg 33085100  T
Q  115 gagttgtttatagtgcacaagcctttttatccagatagggaacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaat 206  Q
    |||||||||||||||||||||  | | | | |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33085101 gagttgtttatagtgcacaagaatctatttgcagataaggaacaagaaataatggaagcagtgaaacacttgcttcaaaacactacttcaat 33085192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 5477606 - 5477662
Alignment:
Q  160 gaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagagtt 216  Q
    |||||||| ||| | ||| ||||||||||||||||||||||| ||||||||||||||    
T  5477606 gaaataatcgaaattgtggaacacttgcttcaaaacactactccaatgcctagagtt 5477662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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