View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13036_low_25 (Length: 240)

Name: NF13036_low_25
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13036_low_25
NF13036_low_25
[»] chr1 (2 HSPs)
chr1 (121-229)||(29061645-29061753)
chr1 (182-229)||(29059997-29060044)
[»] chr2 (1 HSPs)
chr2 (17-100)||(10093250-10093328)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 29061645 - 29061753
Alignment:
Q  121 cttcttagattatctttgcatgacttaggaccgcaaatttgaatttcatctaaactttggattatttaaactgttccattgtttggaattattcacactt 220  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29061645 cttcttagattatctttgcatgtcttaggaccgcaaatttgaatttcatctaaactttggattatttaaactgttccattgtttggaattattcacactt 29061744  T
Q  221 acgcatatt 229  Q
    |||||||||    
T  29061745 acgcatatt 29061753  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 29059997 - 29060044
Alignment:
Q  182 ttatttaaactgttccattgtttggaattattcacacttacgcatatt 229  Q
    |||||||||||||| |||||||| |||||| ||||||||| |||||||    
T  29059997 ttatttaaactgtttcattgtttagaattaatcacacttatgcatatt 29060044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 10093250 - 10093328
Alignment:
Q  17 cttcattatactgaatcaacattaaaatcagggtttcaaagttaacttaactaatcagatcaaaactaaatctgagccaagatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||    
T  10093250 cttcattatactgaatcaacattaaaatcagggtttcaaag-----ttaactaatcagatcaaaactaaatctgagccaagatt 10093328  T

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