View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13036_low_26 (Length: 237)
Name: NF13036_low_26
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13036_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 45793635 - 45793416
Alignment:
| Q |
1 |
tcaccagaccgactatcccataatctcacaactccatcattagatccagtagctacacatgatgtgccaagccatgtcaaacatgtcgctccgtactgcc |
100 |
Q |
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| T |
45793635 |
tcaccagatcgactatcccataatctcacaactccatcattagatccagtagctacacatgatgtgccaagccatgtcaaacatgtcgctccgtactgcc |
45793536 |
T |
|
| Q |
101 |
cacgatggaaaatttcactcatcagacatataaaagaaaattcacatttccaaataaaagtatagtaattgcagagttcattcagtctctaatgcataag |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45793535 |
cacgatggaaattttcactcatcagacatataaaagaaaattcacatttccaaataaaagtatagtaattgcagagttcattcagtctctaatgcataag |
45793436 |
T |
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| Q |
201 |
tatgtcacttgcacaaagtg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
45793435 |
tatgtcacttgcacaaagtg |
45793416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 43816893 - 43816991
Alignment:
| Q |
1 |
tcaccagaccgactatcccataatctcacaactccatcattagatccagtagctacacatgatgtgccaagccatgtcaaacatgtcgctccgtactgc |
99 |
Q |
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| T |
43816893 |
tcaccagatcgactgtcccataatctcacagctccatcattagatccagtagccacatacgatgtgccaagccaggttgaacatgtcactccatactgc |
43816991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 43817284 - 43817327
Alignment:
| Q |
175 |
agttcattcagtctctaatgcataagtatgtcacttgcacaaag |
218 |
Q |
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| T |
43817284 |
agttcattcagtttctaatgcataagcatgtcacttgcacaaag |
43817327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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