View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13036_low_27 (Length: 237)
Name: NF13036_low_27
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13036_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 202044 - 201831
Alignment:
| Q |
5 |
aacagccactacaaaagatgcaagtaaagaaagagttacaggcagttatgaggtagtatacgcaaaacatgtattgaattaaaggaaacaagcaaatact |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
202044 |
aacagccactacaaaagatgcaagtaaagaaagagttacaggcagttatga--tagtatacgcaaaacatgtattgaattaaaggaaacaagcaaagact |
201947 |
T |
|
| Q |
105 |
tctaatcctgtaactctaggaggatacaaacaatagatcaatagacattgcaaaataatacatttataagcacaagacacagatagcgtgcaaactaaag |
204 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
201946 |
tctaatcctgtaactctaggaggatacaaacaattgatcaatagacattgcaaaataatacatttataagcacaagacacagatagcgtgcaaactaaac |
201847 |
T |
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| Q |
205 |
aacaatgcaaccaatg |
220 |
Q |
| |
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|||||||||||||||| |
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| T |
201846 |
aacaatgcaaccaatg |
201831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 6908941 - 6909156
Alignment:
| Q |
5 |
aacagccactacaaaagatgcaagtaaagaaagagttacaggcagttatgaggtagtatacgcaaaacatgtattgaattaaaggaaacaagcaaatact |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6908941 |
aacagccactacaaaagatgcaagtaaagaaagagttacaggcagttatgaggtagtatacgcaaaacatgtattgaattaaaggaaacaagcaaagact |
6909040 |
T |
|
| Q |
105 |
tctaatcctgtaactctaggaggatacaaacaatagatcaatagacattgcaaaataatacatttataagcacaagacacagatagcgtgcaaactaaag |
204 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |
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| T |
6909041 |
tctaatcatgtaactctaggaggatacaaacaatagatcaatagacattgcaaaataatacatttataagcacaagacacatatagtgtgcaaacgaaac |
6909140 |
T |
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| Q |
205 |
aacaatgcaaccaatg |
220 |
Q |
| |
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|||||||||||||||| |
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| T |
6909141 |
aacaatgcaaccaatg |
6909156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 44925329 - 44925477
Alignment:
| Q |
5 |
aacagccactacaaaagatgcaagtaaagaaagagttacaggcagttatgaggtagtatacgcaaaacatgtattgaattaaaggaaacaagcaaatact |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
44925329 |
aacagccactacaaaagatgcaagtaaagaaagagttacagacagttatgaggtagtatatgcaaaacatgtattgaattaaaggaaacaagcaaagact |
44925428 |
T |
|
| Q |
105 |
tctaatcctgtaactctaggaggatacaaacaatagatcaatagacatt |
153 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44925429 |
tctaatcctgtaactctaggaggatacaaacaatagatcaatagacatt |
44925477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 44925847 - 44925909
Alignment:
| Q |
152 |
ttgcaaaataatacatttataagcacaagacacagatagcgtgcaaactaaagaacaatgcaa |
214 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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|
| T |
44925847 |
ttgcaaaataatacatttataagcacaagacacagatagcgtggaaactaaacaacaatgcaa |
44925909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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