View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13036_low_33 (Length: 215)
Name: NF13036_low_33
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13036_low_33 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 11452935 - 11453134
Alignment:
| Q |
16 |
cagccacaataggctcctcagccactggggattgggcaggaggtgaatcaacaaagaggggaggagtatctgagattgttgggacatctaatcctgtaac |
115 |
Q |
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| T |
11452935 |
cagccacaataggctcctcagccactggggattgggcaggaggtgaatcaacaaagaggggaggagcatctgagattgttgggacatctaatcctgtaac |
11453034 |
T |
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| Q |
116 |
tggtgctgatgcctttggtgatttcttttctgaagatgaagatggagctggtgatttcttttctgaagatggagctggtgagtcctttgttgatgacttt |
215 |
Q |
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| T |
11453035 |
tggtcctgatgcctttggtgatttctttactgaagatgaagatggagctggtgatttcttttctgaagatggagctggtgagtcctttgctgatgacttt |
11453134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 11396220 - 11396320
Alignment:
| Q |
37 |
ccactggggattgggcaggaggtgaatcaacaaagaggggaggagtatctgagattgttgggacatctaatcctgtaactggtgctgatgcctttggtga |
136 |
Q |
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| T |
11396220 |
ccactggggattgggcaggaggtgaatcagaaaaggtggtaggagcctctgaggtttttggggattctgcttctgcaactggtgctgatgcctttggtga |
11396319 |
T |
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| Q |
137 |
t |
137 |
Q |
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| T |
11396320 |
t |
11396320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 11404242 - 11404342
Alignment:
| Q |
37 |
ccactggggattgggcaggaggtgaatcaacaaagaggggaggagtatctgagattgttgggacatctaatcctgtaactggtgctgatgcctttggtga |
136 |
Q |
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| T |
11404242 |
ccactggggattgggcaggaggtgaatcagaaaaggtggtaggagcctctgaggtttttggggattctgcttctgcaactggtgctgatgcctttggtga |
11404341 |
T |
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| Q |
137 |
t |
137 |
Q |
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| T |
11404342 |
t |
11404342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 11380842 - 11380942
Alignment:
| Q |
37 |
ccactggggattgggcaggaggtgaatcaacaaagaggggaggagtatctgagattgttgggacatctaatcctgtaactggtgctgatgcctttggtga |
136 |
Q |
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||||||||||||||||||||||||||||| |||| || ||||| |||||| || |||| ||| | ||| |||||||||||||||||||||||| |
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| T |
11380842 |
ccactggggattgggcaggaggtgaatcagaaaaggtggtaggagcctctgaggtttttggcgattctgcttctgcaactggtgctgatgcctttggtga |
11380941 |
T |
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| Q |
137 |
t |
137 |
Q |
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| T |
11380942 |
t |
11380942 |
T |
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