View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13036_low_5 (Length: 503)
Name: NF13036_low_5
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13036_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 220 - 492
Target Start/End: Complemental strand, 1792324 - 1792052
Alignment:
| Q |
220 |
tttgtccctagaaaatttgctaatacaaaaaactaatcatatagttcttttgtgataatttctcaatctgcctgtgcgaccccattagctatcgaaaggt |
319 |
Q |
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| T |
1792324 |
tttgtccctagaaaatttgctaatacaaaaaactaatcatatagttcttttgtgataatttctcaatctgcctgtatgaccccattagctatcgaaaggt |
1792225 |
T |
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| Q |
320 |
cctttcaataatatattttagccgaaataatatcgaaaggatccattcgatagtgtattttgagggcctatgagcatataagagggtgaattgagaaatt |
419 |
Q |
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| T |
1792224 |
cctttcaataatgtattttatccgaaataatatcgaaaggatccttccgatagtgtattttgggggcctatgagcatataagggggtgaattgagaaatt |
1792125 |
T |
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| Q |
420 |
atattttcataattttagaattatgttgagcagggttttaataggcccattaatgccttttccctagagaatt |
492 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
1792124 |
atatttttataattttagaattatgttgagcagggttttaataggcccattgatgccttttccttagagaatt |
1792052 |
T |
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