View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13036_low_7 (Length: 470)
Name: NF13036_low_7
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13036_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 204 - 432
Target Start/End: Original strand, 6716442 - 6716674
Alignment:
| Q |
204 |
tttagactaaaattcaaagttttaatttttgttggctttcttgaattttatgttggctttcttgtgttgacttcaacgaaaggtattcatttttcatttt |
303 |
Q |
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| T |
6716442 |
tttagactaaaattcaaagtttgaatttttgttggctttcttgaattttatgttggctttcttgtgttgacttcaacgaaaggtatttatttttcatttt |
6716541 |
T |
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| Q |
304 |
cgatcaaatacagcagtatgaagagaaaaaatgggaaaatattgttagtttgttatttaagttttaattg----nnnnnnnnnngtttcctctctatttt |
399 |
Q |
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| T |
6716542 |
cgaccaaatacaacagtatgaaaagaaaaaatgggaaaatattgttagtttgttatttaagttttaattgttgttttttttttggtttcctctctatttt |
6716641 |
T |
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| Q |
400 |
gagttgagtgaaatatttaacatttttcatgta |
432 |
Q |
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| T |
6716642 |
gagttgagtgaaatatttaacatttttcatgta |
6716674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 6716365 - 6716414
Alignment:
| Q |
127 |
ttcaatgaaagttaatcattgttcatttacattcaaatatattattatac |
176 |
Q |
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| T |
6716365 |
ttcaatgaaagttaatcattgttcatttacattcaaatatatcattatac |
6716414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 6716256 - 6716308
Alignment:
| Q |
18 |
tcatttagatcaatatatatcattatgcaaaaactaaaatcaaaacggggaaa |
70 |
Q |
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| T |
6716256 |
tcatttagaccaatatatatcattatgcaaaaactaaaatcaaaatggggaaa |
6716308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 373
Target Start/End: Original strand, 6721649 - 6721749
Alignment:
| Q |
276 |
tcaacgaaaggtattcatttttcattttcgatcaaatacagcagtatgaagagaaaa--aat-gggaaaatattgttagtttgttatttaagttttaatt |
372 |
Q |
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| T |
6721649 |
tcaatgaaaggtgttcattgttaattttcaaccaaatacagcagtatgaaaagaaaaataatggggaaaataatgttagcttgttattcaagtttcaatt |
6721748 |
T |
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| Q |
373 |
g |
373 |
Q |
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| T |
6721749 |
g |
6721749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 427
Target Start/End: Original strand, 6721369 - 6721405
Alignment:
| Q |
391 |
ctctattttgagttgagtgaaatatttaacatttttc |
427 |
Q |
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| T |
6721369 |
ctctattttgagttgaatgaaatatttaacatttttc |
6721405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 42230135 - 42230094
Alignment:
| Q |
127 |
ttcaatgaaagttaatcattgttcatttacattcaaatatat |
168 |
Q |
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| T |
42230135 |
ttcaatgaaagttaatcattattcatttacactcatatatat |
42230094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 42230790 - 42230758
Alignment:
| Q |
125 |
agttcaatgaaagttaatcattgttcatttaca |
157 |
Q |
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| T |
42230790 |
agttcaatgaaagttaatcatttttcatttaca |
42230758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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