View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13036_low_8 (Length: 450)

Name: NF13036_low_8
Description: NF13036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13036_low_8
NF13036_low_8
[»] chr1 (5 HSPs)
chr1 (30-432)||(46821256-46821653)
chr1 (75-140)||(46827883-46827948)
chr1 (87-140)||(46820922-46820975)
chr1 (80-128)||(7463459-7463507)
chr1 (80-128)||(11426897-11426945)
[»] chr2 (1 HSPs)
chr2 (75-128)||(36718978-36719031)
[»] chr5 (1 HSPs)
chr5 (86-129)||(6353734-6353777)
[»] chr8 (1 HSPs)
chr8 (89-130)||(9484318-9484359)
[»] chr4 (1 HSPs)
chr4 (79-127)||(14473421-14473469)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 30 - 432
Target Start/End: Complemental strand, 46821653 - 46821256
Alignment:
Q  30 cagtgtcatctctataaagatggtacaggtgaaaactttctcgttatagaaaagctaattttaaccattaaattaaataaaaaacacacttttatcatac 129  Q
    ||||||||||||  ||||||||||| |||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46821653 cagtgtcatctcagtaaagatggtaaaggtgaaaactttctcatcataaaaaagctaattttaactattaaattaaataaaaaacacacttttatcatac 46821554  T
Q  130 atccataccactagannnnnnnnnnnnccctaccttcttccaccaccattctctttaatctcttaaccttttctcaaaaaccatggactgtaacttatct 229  Q
    ||| |||||||||||            || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46821553 atctataccactagattttttttttt-ccataccttcttccaccaccattctctttaatctcttaaccttttctcaaaaaccatggactgtaacttatct 46821455  T
Q  230 tttttcccctcatgttgatcttgttacacctttcatctcacnnnnnnnnttgtttgacatattgaaaacatgaatactaaaatcaacaatttccttacaa 329  Q
    |||||||||||||||||||||||||||||||||||||||||        |||||    ||||||||||||||||||||||||||||||||||||||||||    
T  46821454 tttttcccctcatgttgatcttgttacacctttcatctcacaaaaaatattgtt----atattgaaaacatgaatactaaaatcaacaatttccttacaa 46821359  T
Q  330 aacaaacaacttaaaaaccaattccgatttagtataaaataaacatctattgataatttgatagtgtaacatatatgaaattcacactaaaaccccccaa 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46821358 aacaaacaacttaaaaaccaattccgatttagtataaaataaacatctattgataatttgatagtgtaacatatatgaaattcacactaaaaccccccaa 46821259  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 46827883 - 46827948
Alignment:
Q  75 atagaaaagctaattttaaccattaaattaaataaaaaacacacttttatcatacatccataccac 140  Q
    |||||||| |||||||||||||||| |||||||||| |||||| |||||||||||||||| |||||    
T  46827883 atagaaaaactaattttaaccattagattaaataaagaacacatttttatcatacatccacaccac 46827948  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 46820922 - 46820975
Alignment:
Q  87 attttaaccattaaattaaataaaaaacacacttttatcatacatccataccac 140  Q
    |||||||| |||| |||||||||| |||||||||||||| |||||||| |||||    
T  46820922 attttaactattagattaaataaagaacacacttttatcgtacatccacaccac 46820975  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 7463459 - 7463507
Alignment:
Q  80 aaagctaattttaaccattaaattaaataaaaaacacacttttatcata 128  Q
    |||||||||||| ||||||| |||||||||| |||||| ||||||||||    
T  7463459 aaagctaattttgaccattagattaaataaagaacacagttttatcata 7463507  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 11426897 - 11426945
Alignment:
Q  80 aaagctaattttaaccattaaattaaataaaaaacacacttttatcata 128  Q
    |||||||||||| ||||||| ||||| |||| |||||| ||||||||||    
T  11426897 aaagctaattttgaccattagattaactaaagaacacagttttatcata 11426945  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 36719031 - 36718978
Alignment:
Q  75 atagaaaagctaattttaaccattaaattaaataaaaaacacacttttatcata 128  Q
    |||| |||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  36719031 ataggaaagctaattttaaccattaaattaaataagaaacatacttttatcata 36718978  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 6353734 - 6353777
Alignment:
Q  86 aattttaaccattaaattaaataaaaaacacacttttatcatac 129  Q
    |||||||||||||| || |||| |||||||||||||||||||||    
T  6353734 aattttaaccattagatgaaatgaaaaacacacttttatcatac 6353777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 9484318 - 9484359
Alignment:
Q  89 tttaaccattaaattaaataaaaaacacacttttatcataca 130  Q
    ||||||||||||||||||| || |||||| ||||||||||||    
T  9484318 tttaaccattaaattaaatgaagaacacagttttatcataca 9484359  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 14473469 - 14473421
Alignment:
Q  79 aaaagctaattttaaccattaaattaaataaaaaacacacttttatcat 127  Q
    ||||| || ||||||||||| |||||||||||||||||| | |||||||    
T  14473469 aaaagttatttttaaccatttaattaaataaaaaacacaatcttatcat 14473421  T

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