View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_high_14 (Length: 453)
Name: NF13037_high_14
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 27 - 276
Target Start/End: Complemental strand, 1825024 - 1824775
Alignment:
| Q |
27 |
atcaaaaaaggtgattctccaccacttgtatttttgcataattcagtgtaacaaagtgatgataattcagtgtgaatacagcttgtctaggtcagttttt |
126 |
Q |
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| T |
1825024 |
atcaaaaaaggtgattctccaccacttgtatttttgcataattcagtgttacaaagtgatgataattcagtgtgaatacaacttgtctaggtcagtcttt |
1824925 |
T |
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| Q |
127 |
ccctctactctatgggtctcatagtcatagatgtccctcattcacacatggtcccattccaaaacattgatccaacggctgatatcaaaatagcatgaaa |
226 |
Q |
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| T |
1824924 |
ccctctgctctatgggtctcatagttatagatgtccctcattcacacatggtcccattccaaaacattgatccaacggctgatatcaaaatagcatgaaa |
1824825 |
T |
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| Q |
227 |
aacgagtaatatcatgtccccatcaatttcacatttacacttatttatag |
276 |
Q |
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| T |
1824824 |
aacgagcaatatcatgtccccatcaatttcacatctacatttatttatag |
1824775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 287 - 399
Target Start/End: Complemental strand, 1824727 - 1824605
Alignment:
| Q |
287 |
cattattattcctcttgtgcaaataaaaaacatcacaacacaaacacaaaactttgc----------tcaattcaattttccaatggaggaatcatggga |
376 |
Q |
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| T |
1824727 |
cattattattcctcttgtgcaaataaaaaacatcacaagacaaacacaaaactttgctcaagttagctcaattcaattttccaatggaggagtcatggga |
1824628 |
T |
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| Q |
377 |
aaattttcatcttgacatggtaa |
399 |
Q |
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| T |
1824627 |
aaattttcatcttgacatggtaa |
1824605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 1824778 - 1824735
Alignment:
| Q |
153 |
atagatgtccctcattcacacatggtcccattccaaaacattga |
196 |
Q |
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| T |
1824778 |
atagatgtccctcattcacacatggtcccattccaaaacattga |
1824735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 1842244 - 1842192
Alignment:
| Q |
11 |
aaaatatgtctgtttgatcaaaaaaggtgattctccaccacttgtatttttgc |
63 |
Q |
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| T |
1842244 |
aaaatgtgtttgtttgatccaaaaaagtgattctccaccacttgtatttttgc |
1842192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Complemental strand, 1841906 - 1841860
Alignment:
| Q |
353 |
ttttccaatggaggaatcatgggaaaattttcatcttgacatggtaa |
399 |
Q |
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| T |
1841906 |
ttttccaatggaagagtcctgggaaaattttcatcttgacacggtaa |
1841860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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