View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_high_18 (Length: 418)
Name: NF13037_high_18
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 411
Target Start/End: Original strand, 17776680 - 17777073
Alignment:
| Q |
18 |
agagagaaatcagaattgcatgttcgtgataaatttgggatcatgcttctcgggagatcaagcattacgcttnnnnnnnnnnnnnnnnnnnntattgtac |
117 |
Q |
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| T |
17776680 |
agagagaaatcagaattgcacgttcctgacaaattcgggatcatgcttctcgggagatcaagcattacgcttaaaaaaatttaaaagaaaaatattgtac |
17776779 |
T |
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| Q |
118 |
tataatacataatgtggcataagagatagatattaggagtctactcgcatacatttgatcgaaatgattggtatttgaccatacttatgaaaaatcattt |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||| |
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| T |
17776780 |
tatgatacataatgtggcataagagatagatattaggagtctactcgcatacatttgatctaaatgattggt-tttgaccgtacttatgaaaaatcgttt |
17776878 |
T |
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| Q |
218 |
gttgtgataggttagcctcttaaatagatttcaattatcttgtgaaattgtatgagaggata-ctttgctaacaaaaagtacgtataataaaatctctag |
316 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||| |||||||||||| |||||||| |
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| T |
17776879 |
gttgtaatagattagcctcttaaatagatttcaattatcttgtgaaattgtatgtgaggatagcttcgctaacaaaatgtacgtataatataatctctaa |
17776978 |
T |
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| Q |
317 |
tatagtgatctcttattgacttgaatagtaagtgacattaattaatttttcttggtaattgttcatttttaattaagaccaattgccctttgctt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17776979 |
tatagtgatctcttattgacttgaatagtaagtgacattaattaatttttcttgggaattgttcatttttaattaagaccaattgccctttgctt |
17777073 |
T |
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