View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_high_20 (Length: 394)
Name: NF13037_high_20
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 362
Target Start/End: Original strand, 39488275 - 39488616
Alignment:
| Q |
9 |
gaagaatatctgttttgttagtttctgtgaagaaaatcacatatgtttctgtacatgcatcatgccttgattgtgttattcttttgctggtaacatgaag |
108 |
Q |
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| T |
39488275 |
gaagaatatccgttttgttagtttctgtgaagaaaatcacatatgtttctgtacatgcatcatgccttgattgtgttattattttgctcgtaacatgaag |
39488374 |
T |
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| Q |
109 |
gtgcggctgaaaaatgagaaaagctgtcatctaatctgaatagttaacactgatattgaataaaacttctatttgcttcttcatatactttt-aannnnn |
207 |
Q |
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| T |
39488375 |
gtgcggctgaaaaa-------------catataatctgaatagttaacactgatattgaataaaacttctatttgcttcttcatatactttttaattttt |
39488461 |
T |
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| Q |
208 |
nnnaatagctaaattaattgacaaattttattgacatcccaaagcaaatgacttagaaaacatactcctgcaaattcctaatacagaacaacagcaatca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39488462 |
tttaatagctaaattaattgacaaattttattgacatcccaaagcaaatgacttagaaaacatactcctgcaaattcctaatacagaacaacagcaatca |
39488561 |
T |
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| Q |
308 |
gccttgaaacaagtcgaaaaaacactatcagaacctaaaaactgaaggcattgcg |
362 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39488562 |
gccttgaaacaagtcgaaaaaactctatcagaacctaaaaactgaaggcattgcg |
39488616 |
T |
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