View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13037_high_27 (Length: 344)

Name: NF13037_high_27
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13037_high_27
NF13037_high_27
[»] chr4 (6 HSPs)
chr4 (150-315)||(12122429-12122594)
chr4 (165-315)||(1508684-1508834)
chr4 (167-244)||(1490980-1491058)
chr4 (73-130)||(656882-656941)
chr4 (197-249)||(657004-657056)
chr4 (281-313)||(1491086-1491118)
[»] chr2 (1 HSPs)
chr2 (142-312)||(44576422-44576593)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 150 - 315
Target Start/End: Complemental strand, 12122594 - 12122429
Alignment:
Q  150 tttggacccgttgacccataaaatgcgttgttcatgtatcccacttctctaatacaggatactcatataaaatcccaacagcacaattgcaaagggacta 249  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||    
T  12122594 tttggactcgttgatccataaaatgcattgttcatgtatcccacttctctaatatagtatactcatataaaatcccaacagtacaattgcaaagggacta 12122495  T
Q  250 gattatcatgagctagacacccaaactgtcaaaacaagtacaaggacaagagttctcaaaaaccga 315  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12122494 cattatcatgagctagacacccaaactgtcaaaacaattacaaggacaagagttctcaaaaaccga 12122429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 165 - 315
Target Start/End: Complemental strand, 1508834 - 1508684
Alignment:
Q  165 ccataaaatgcgttgttcatgtatcccacttctctaatacaggatactcatataaaatcccaacagcacaattgcaaagggactagattatcatgagcta 264  Q
    ||||||||||| ||||||||||||||| ||||||||||||| |||||||| | ||||||| |||| |||||||||||||||||||   ||||||| ||||    
T  1508834 ccataaaatgccttgttcatgtatccctcttctctaatacaagatactcaaaaaaaatcctaacaacacaattgcaaagggactactctatcatgtgcta 1508735  T
Q  265 gacacccaaactgtcaaaacaagtacaaggacaagagttctcaaaaaccga 315  Q
    |||||||||||||||||| ||| |||||| |||||||||||||||||||||    
T  1508734 gacacccaaactgtcaaaccaaatacaagaacaagagttctcaaaaaccga 1508684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 1491058 - 1490980
Alignment:
Q  167 ataaaatgcgttgttcatgtatcccacttctctaatacaggatactcatataaaa-tcccaacagcacaattgcaaagg 244  Q
    ||||||||| |||||||  ||||||| |||  ||||||| |||||||||| |||| |||||||||||||||||||||||    
T  1491058 ataaaatgctttgttcacatatcccatttccttaatacaagatactcataaaaaaatcccaacagcacaattgcaaagg 1490980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 656882 - 656941
Alignment:
Q  73 atgcatctgtatggccacaa--agaattacaccatgtggtacccgttatggatagggaca 130  Q
    ||||||||||||||||||||  | ||||| ||| || |||||| ||||||||||||||||    
T  656882 atgcatctgtatggccacaatgaaaattagaccctgcggtaccggttatggatagggaca 656941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 657004 - 657056
Alignment:
Q  197 tctaatacaggatactcatataaaatcccaacagcacaattgcaaagggacta 249  Q
    ||||||||| |||| | | | ||||| ||||||||||||||||||||||||||    
T  657004 tctaatacaagatatttaaaaaaaattccaacagcacaattgcaaagggacta 657056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 313
Target Start/End: Complemental strand, 1491118 - 1491086
Alignment:
Q  281 aaacaagtacaaggacaagagttctcaaaaacc 313  Q
    |||||| ||||||||||||||||||||||||||    
T  1491118 aaacaattacaaggacaagagttctcaaaaacc 1491086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 312
Target Start/End: Complemental strand, 44576593 - 44576422
Alignment:
Q  142 ttctgaaatttggacccgttgacccataaaatgcgttgttcatgtatcccacttctctaatacaggatactcatataaaatcccaacagcacaattgcaa 241  Q
    |||| |||||| ||| |||||| ||||| || || |  ||||||||||||  ||||||| |||| || | ||| | || |||||||||  ||||||||||    
T  44576593 ttctaaaatttcgactcgttgatccatagaaggcctcattcatgtatcccctttctctagtacaagacattcacaaaatatcccaacattacaattgcaa 44576494  T
Q  242 agggactagattatcatgagctagacacccaaactgtc-aaaacaagtacaaggacaagagttctcaaaaac 312  Q
    |||||||| | |||||||  | || |||  |||||||| ||||||| |||||||||||||||||||||||||    
T  44576493 agggactacactatcatgttccaggcacataaactgtcaaaaacaaatacaaggacaagagttctcaaaaac 44576422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University