View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13037_high_30 (Length: 320)

Name: NF13037_high_30
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13037_high_30
NF13037_high_30
[»] chr3 (2 HSPs)
chr3 (159-302)||(1310237-1310382)
chr3 (19-60)||(19932296-19932337)
[»] chr8 (3 HSPs)
chr8 (52-202)||(44667629-44667781)
chr8 (2-60)||(5538436-5538496)
chr8 (81-202)||(6816851-6816978)
[»] chr6 (1 HSPs)
chr6 (81-202)||(34518754-34518880)
[»] chr4 (1 HSPs)
chr4 (52-165)||(28657501-28657613)
[»] chr7 (3 HSPs)
chr7 (54-146)||(28382724-28382816)
chr7 (52-146)||(28387076-28387170)
chr7 (1-60)||(16420272-16420329)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-60)||(8984-9041)
[»] chr2 (1 HSPs)
chr2 (64-152)||(2037938-2038026)
[»] chr1 (3 HSPs)
chr1 (19-60)||(18901508-18901549)
chr1 (1-32)||(18901456-18901487)
chr1 (19-58)||(51784794-51784833)
[»] chr5 (1 HSPs)
chr5 (1-32)||(37940550-37940581)
[»] scaffold0004 (1 HSPs)
scaffold0004 (147-202)||(189050-189106)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 159 - 302
Target Start/End: Original strand, 1310237 - 1310382
Alignment:
Q  159 attataataacggttcctagtc-ttttcacacacatcca-ttctattctgcgaacaagaaatacgtagagagaaagagaatggagagggagtctgacgga 256  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1310237 attataataacggttcctagtccttttcacacacatccacttctattctgcgaacaagaaatacatagagagaaagagaatggagagggagtctgacgga 1310336  T
Q  257 ggaagagatagaacaaacattcaccccaaagagacaagtaagaagt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  1310337 ggaagagatagaacaaacattcaccccaaagagacaagtaagaagt 1310382  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 19932296 - 19932337
Alignment:
Q  19 tatttattagagtaatatataataagatcagcaagaaagtag 60  Q
    ||||||||| |||||||||||||||||| ||||| |||||||    
T  19932296 tatttattaaagtaatatataataagattagcaataaagtag 19932337  T

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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 52 - 202
Target Start/End: Original strand, 44667629 - 44667781
Alignment:
Q  52 agaaagtagtaaatacaacttcttccctattcatatacccatgacaccccactttccactccatgatttagtcccacgtttttaggaagaaagttagtga 151  Q
    ||||||||| | |||||||||||||||| || ||||  ||||||||| |||||||||||||||||||||||| |||| |||||||||||| ||||||||     
T  44667629 agaaagtaggagatacaacttcttccctgtttatatgaccatgacacaccactttccactccatgatttagttccacatttttaggaagagagttagtgg 44667728  T
Q  152 gagagttattataataa-cggttcctagtc-ttttcacacacatccattctat 202  Q
    ||||||||||| ||||| ||||||||| || ||||||||||||  ||||||||    
T  44667729 gagagttattagaataaccggttcctattcattttcacacacactcattctat 44667781  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 5538496 - 5538436
Alignment:
Q  2 tagatattactagctagtatttattagagtaata--tataataagatcagcaagaaagtag 60  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||    
T  5538496 tagatattactagctagtatttattagagtaatatatataataagattagcaagaaagtag 5538436  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 202
Target Start/End: Original strand, 6816851 - 6816978
Alignment:
Q  81 ttcatatacccatgacaccccactttccactccatgatttagtcccacgttttt----aggaagaaagttagtgagagagttattataataa-cggttcc 175  Q
    |||||||  ||||||||| |||||||||||||||||| ||||| |||| |||||    ||||||  ||| |||||||||||||| ||||||| ||||||     
T  6816851 ttcatatgaccatgacacaccactttccactccatgaattagttccacatttttagcaaggaaggtagtgagtgagagagttataataataaccggttct 6816950  T
Q  176 tagtc-ttttcacacacatccattctat 202  Q
    || || |||| ||||||| |||||||||    
T  6816951 tattctttttaacacacacccattctat 6816978  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 34518880 - 34518754
Alignment:
Q  81 ttcatatacccatgacaccccactttccactccatgatttagtcccacgtttttaggaagaaagtt----agtgagagagttattataataacggttcct 176  Q
    |||||||  ||||||||| |||||||||||||||||||||||| |||| ||||||| ||| |||||    ||||| ||||||||||||||||||||||||    
T  34518880 ttcatatgaccatgacacaccactttccactccatgatttagttccacatttttagcaaggaagttagcgagtgaaagagttattataataacggttcct 34518781  T
Q  177 agtc-ttttcacacacatccattctat 202  Q
    | || |||||||||| | |||||||||    
T  34518780 attctttttcacacatacccattctat 34518754  T

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Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 28657613 - 28657501
Alignment:
Q  52 agaaagtagtaaatacaacttcttccctattcatatacccatgacaccccactttccactccatgatttagtcccacgtttttaggaagaaagttagtga 151  Q
    ||||||||| | ||||| |||||||| |||||||||  ||| ||||| |||||||||||||||||||||||| |||| ||||||||||  ||||||  ||    
T  28657613 agaaagtaggagatacagcttcttccttattcatatgaccacgacacaccactttccactccatgatttagttccacttttttaggaaagaagtta-cga 28657515  T
Q  152 gagagttattataa 165  Q
    ||||||||||||||    
T  28657514 gagagttattataa 28657501  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 28382724 - 28382816
Alignment:
Q  54 aaagtagtaaatacaacttcttccctattcatatacccatgacaccccactttccactccatgatttagtcccacgtttttaggaagaaagtt 146  Q
    ||||||| | |||||||||||||||| |||||||  || |||||| |||||||||||||||||||||||| ||||  |||||||||| |||||    
T  28382724 aaagtaggagatacaacttcttccctgttcatatgaccgtgacacaccactttccactccatgatttagttccactattttaggaaggaagtt 28382816  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 28387076 - 28387170
Alignment:
Q  52 agaaagtagtaaatacaacttcttccctattcatatacccatgacaccccactttccactccatgatttagtcccacgtttttaggaagaaagtt 146  Q
    ||||||||||| |||||||||||||| |||||||||  || ||||||  ||||||||||||||||||||||| |||   |||||||||| |||||    
T  28387076 agaaagtagtagatacaacttcttccttattcatatgaccgtgacacatcactttccactccatgatttagttccattattttaggaaggaagtt 28387170  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 16420272 - 16420329
Alignment:
Q  1 ctagatattactagctagtatttattagagtaatatataataagatcagcaagaaagtag 60  Q
    ||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  16420272 ctagatattactagctagtatttattagagta--atataataagattagcaagaaagtag 16420329  T

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Target: scaffold0003 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8984 - 9041
Alignment:
Q  1 ctagatattactagctagtatttattagagtaatatataataagatcagcaagaaagtag 60  Q
    ||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  8984 ctagatattactagctagtatttattagagta--atataataagattagcaagaaagtag 9041  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 2037938 - 2038026
Alignment:
Q  64 atacaacttcttccctattcatatacccatgacaccccactttccactccatgatttagtcccacgtttttaggaagaaagttagtgag 152  Q
    |||||||||||||| | |||||||   |||||||| ||||||||||| |||||||||||| |||| ||||||| ||| |||||||||||    
T  2037938 atacaacttcttccatgttcatatgatcatgacacaccactttccaccccatgatttagttccacatttttagcaaggaagttagtgag 2038026  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 18901508 - 18901549
Alignment:
Q  19 tatttattagagtaatatataataagatcagcaagaaagtag 60  Q
    ||||||||| |||||||||||||||||| |||||||||||||    
T  18901508 tatttattaaagtaatatataataagattagcaagaaagtag 18901549  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 18901456 - 18901487
Alignment:
Q  1 ctagatattactagctagtatttattagagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  18901456 ctagatattactagctagtatttattagagta 18901487  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 51784833 - 51784794
Alignment:
Q  19 tatttattagagtaatatataataagatcagcaagaaagt 58  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  51784833 tatttattaaagtaatatataataagattagcaagaaagt 51784794  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 37940581 - 37940550
Alignment:
Q  1 ctagatattactagctagtatttattagagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  37940581 ctagatattactagctagtatttattagagta 37940550  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 189106 - 189050
Alignment:
Q  147 agtgagagagttattataataacggttcctagt-cttttcacacacatccattctat 202  Q
    |||||||||||||||||||||| |||||||| |  |||||||||| | |||||||||    
T  189106 agtgagagagttattataataatggttcctattgtttttcacacatacccattctat 189050  T

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