View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_high_31 (Length: 315)
Name: NF13037_high_31
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_high_31 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 20756879 - 20756584
Alignment:
| Q |
1 |
agaaattaatcagaaaccaccagacacaaaataaaatcacagggtttcccttgttatcaatgtttttggtagaggaagcaacttcttgtgatttaaatct |
100 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20756879 |
agaaattaatcaaaaaccactagacacaaaataaaatcacagggttccccttgttatcaatgtttttggtagaggaagcaacttcttgtgatttaaatct |
20756780 |
T |
|
| Q |
101 |
atgtgttcctatagtagacataatcattctgtaatttttaatttaatgtaacatggccagctaatattatttatctttcctaattaaaaatgatgcaaac |
200 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20756779 |
atgtgttcccatagtagacagaatcattctgtaatttttaatttaatgtaacatggccagctaatattatttatcttacctaattaaaaatgatgcaaac |
20756680 |
T |
|
| Q |
201 |
ttttatttgaaattttgaagatatattgtcttggtgttggcatgtctctagggtctaccaattctatatagtttaattctttgcatgtgtatttct |
296 |
Q |
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| T |
20756679 |
ttttatttgaaattttgaagatatattgtcttggtgttggcatgtctctagggtccaccaattctatatagtttaattctttgcatgtgtatttct |
20756584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 3 - 296
Target Start/End: Complemental strand, 20769104 - 20768805
Alignment:
| Q |
3 |
aaattaatcagaaaccaccagacacaaaa-taaaatcacagggtttcccttgttatcaatgtttttggtagaggaagcaacttcttgtgatttaaatcta |
101 |
Q |
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|||||||||||||||||| |||| |||| ||| |||| ||||| |||||||||||||||||||||| ||||| |||||||| ||||||||||||||| |
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| T |
20769104 |
aaattaatcagaaaccacttgacaaaaaaataatatcatggggttccccttgttatcaatgtttttggcagaggtagcaacttgatgtgatttaaatcta |
20769005 |
T |
|
| Q |
102 |
tgtgt-----tcctatagtagacataatcattctgtaatttttaatttaatgtaacatggccagctaatattatttatctttcctaattaaaaatgatgc |
196 |
Q |
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| T |
20769004 |
tgtttggttttcctatagcaaacagaatcattctgtactttttaatttaatgtaacatggccagctaatattatttatattacctaattaacaatgatgc |
20768905 |
T |
|
| Q |
197 |
aaacttttatttgaaattttgaagatatattgtcttggtgttggcatgtctctagggtctaccaattctatatagtttaattctttgcatgtgtatttct |
296 |
Q |
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||| ||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20768904 |
aaaattttatttgaaattttgaatatctattatcttggtgttggcatgtctctagggtctaccaattctatatagtttaattctttgcatgtgtatttct |
20768805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 20747167 - 20747109
Alignment:
| Q |
231 |
ttggtgttggcatgtctctagggtctaccaattctatatagtttaattctttgcatgtgt |
290 |
Q |
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| T |
20747167 |
ttggtgttggcatgcctctaggg-ctaccaattctatatagtttaattatttgcatgtgt |
20747109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 20748606 - 20748524
Alignment:
| Q |
1 |
agaaattaatcagaaaccaccagacacaaaataaaatcacagggtttcccttgttatcaatgtttttggtagaggaagcaactt |
84 |
Q |
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|||||||||| ||| |||| ||||| ||| | |||||| ||||| |||||||| ||||||||||||| |||||||||||||| |
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| T |
20748606 |
agaaattaat-agagaccagtagacaaaaatttaaatcatggggttccccttgttgtcaatgtttttggcagaggaagcaactt |
20748524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 48866890 - 48866789
Alignment:
| Q |
1 |
agaaattaatcagaaaccaccagacacaaaataaaatcacagggtttcccttgttatcaatgtttttggtagaggaagcaacttcttgtgatttaaatct |
100 |
Q |
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|||||||||| |||||||| | ||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48866890 |
agaaattaat--gaaaccactaaacaaaaaataaaatcacagcgttccccttcttatcaatgtttttggtagaggaagcaacttgttgtgatttaaatct |
48866793 |
T |
|
| Q |
101 |
atgt |
104 |
Q |
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|||| |
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|
| T |
48866792 |
atgt |
48866789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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