View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_high_33 (Length: 308)
Name: NF13037_high_33
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 45312762 - 45312999
Alignment:
| Q |
18 |
taatgttatgttgtgggtcagagataattcaagtcaattttgaggaagccaataatatgttttccttctcattctttacaaattgagtttttgtcaaatt |
117 |
Q |
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| T |
45312762 |
taatgttatgttgtgggtcagagataattcaagtcaattttgaggaagccaataatatgttttccttctcattctttacaaattgagtttttgtcaaatt |
45312861 |
T |
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| Q |
118 |
cacgattttctcaaggaagctagtaattgtttttcctcgaataggtgcatttggctgaatatggtgtgcattggaatttcttcttcacgcttgctgctat |
217 |
Q |
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| T |
45312862 |
cacgattttctcaaggaagctagtaattgtttttcctcgaataggtgcatttggctgaatatggtgtgcattggaatttcttctttacgcttgctgctat |
45312961 |
T |
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| Q |
218 |
ctcaatccttacatccattattaacattcctccacaat |
255 |
Q |
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| T |
45312962 |
ctcaatccttacatcctttattaacattcctccacaat |
45312999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 108 - 255
Target Start/End: Original strand, 27758540 - 27758687
Alignment:
| Q |
108 |
ttgtcaaattcacgattttctcaaggaagctagtaattgtttttcctcgaataggtgcatttggctgaatatggtgtgcattggaatttcttcttcacgc |
207 |
Q |
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| T |
27758540 |
ttgtctaattcacgattttctcaaggaagctagtaattgtttttcctcgaataggtgcatttggctgaatatggtgtgcattggaatttcttcttcacgc |
27758639 |
T |
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| Q |
208 |
ttgctgctatctcaatccttacatccattattaacattcctccacaat |
255 |
Q |
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| T |
27758640 |
ttgctgctatctcgatccttacatccgttattaacattcctccacaat |
27758687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 27758421 - 27758512
Alignment:
| Q |
18 |
taatgttatgttgtgggtcagagataattcaagtcaattttgaggaagccaataatatgttttccttctcattctttacaaattgagttttt |
109 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||| |
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| T |
27758421 |
taatgttatattgtgggtcggagataattcaagtcaatttttaggaagccaataatatattttccttctcattctttacacattaagttttt |
27758512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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