View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_high_34 (Length: 307)
Name: NF13037_high_34
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 42301085 - 42301251
Alignment:
| Q |
13 |
aaaatcaaatatgaaaacactggataagccattaaaagaaaggattatgttat---tactgaggtaatctgatttatatgtcaaatttgaattcagcata |
109 |
Q |
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| T |
42301085 |
aaaatcaaatatgaaaacaccggataagccattaaaagaaaagattatgttattattactgaggtaatctgatttatatgtcaaatttgaattcaacata |
42301184 |
T |
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| Q |
110 |
gcaaactcaaggtcttcgcttaacaacgaggttcctccttcaaccaaatttatcaacaaaacaacta |
176 |
Q |
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| T |
42301185 |
gcaaactcaaggtcttcgcttaacaacaaggttcctccttcaaccaaatttatcaacaaaacaacta |
42301251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 42295266 - 42295437
Alignment:
| Q |
13 |
aaaatcaaatatgaaaacactggataagccattaaaagaaaggattatgttattactgaggtaatctgatttatatgtcaaatttgaattcagcatagca |
112 |
Q |
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||||||| |||||||||||| ||||| |||||| | ||||| |||||||||||||||||||||||| |||||||||||||| |||||||||| |||| || |
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| T |
42295266 |
aaaatcatatatgaaaacaccggatatgccattgacagaaaagattatgttattactgaggtaatcggatttatatgtcaattttgaattcaacataaca |
42295365 |
T |
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| Q |
113 |
aactcaaggtcttcgcttaacaacgaggttcctccttcaaccaaatttatcaacaaaacaactactgcagaca |
185 |
Q |
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| T |
42295366 |
aactcaaggttttcccttaacaacaaggttcct-cttcaaccaaatttatcaacaaaacaactactgcagaca |
42295437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 42295476 - 42295543
Alignment:
| Q |
229 |
acatcaacatgtaatgataatataaacttctatgcttaacaat-atacaattcattttcaacctggat |
295 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| |
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| T |
42295476 |
acatcaacatctaatgataatataaacttctatgcttaacaataatacaattcatcttcaacttggat |
42295543 |
T |
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