View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13037_high_35 (Length: 305)
Name: NF13037_high_35
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_high_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 11118950 - 11119215
Alignment:
| Q |
20 |
aggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgattatacgacttcgaaaatactggcaaacctgatccaactcttgacccaaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11118950 |
aggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgattatacgacttcgacaatactggcaaacctgatccaactcttgacccaaca |
11119049 |
T |
|
| Q |
120 |
tacttaaaacagttgcaaaaacaatgtcctcaaaatggacctggaaataacgttgtcaatttcgatccaacaactcctgataaattagacaagaactact |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
11119050 |
tacttaaaacagttgcaaaaacaatgtcctcaaaatggacctggaaataacgttgtcaattttgatccaacaactcccgataaattcgacaagaactact |
11119149 |
T |
|
| Q |
220 |
acaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119150 |
acaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
11119215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 11111179 - 11111444
Alignment:
| Q |
20 |
aggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgattatacgacttcgaaaatactggcaaacctgatccaactcttgacccaaca |
119 |
Q |
| |
|
|||||| |||||||| || ||||||||||| |||||||| ||||||||||||||| ||||| | |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
11111179 |
aggtgctcatacatttgggagagcacgttgccttttcatccttgatcgattatacaacttcaacaatactggcaaacccgatccaactcttgatacaaca |
11111278 |
T |
|
| Q |
120 |
tacttaaaacagttgcaaaaacaatgtcctcaaaatggacctggaaataacgttgtcaatttcgatccaacaactcctgataaattagacaagaactact |
219 |
Q |
| |
|
|||||| ||||||||| ||| ||||| ||||| |||||| ||||||||||| ||| |||||||| ||||| |||||||||| ||| |||||||||| || |
|
|
| T |
11111279 |
tacttacaacagttgcgaaaccaatgccctcagaatggaactggaaataaccgtgttaatttcgacccaacgactcctgatacattggacaagaacttct |
11111378 |
T |
|
| Q |
220 |
acaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11111379 |
acaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattattctcaacaccgggtg |
11111444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 20 - 280
Target Start/End: Complemental strand, 10793615 - 10793355
Alignment:
| Q |
20 |
aggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgattatacgacttcgaaaatactggcaaacctgatccaactcttgacccaaca |
119 |
Q |
| |
|
|||||| || ||||| || |||||||||||| ||| | |||||||||||||| ||||| ||||||||| ||||||||||||||||||| |||| |
|
|
| T |
10793615 |
aggtgcacacacatttgggagagcacgttgttctttattcgttgatcgattatacaacttcagcaatactggcgaacctgatccaactcttgatacaacg |
10793516 |
T |
|
| Q |
120 |
tacttaaaacagttgcaaaaacaatgtcctcaaaatggacctggaaataacgttgtcaatttcgatccaacaactcctgataaattagacaagaactact |
219 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| |||||||| ||||| |||||||||| ||| |||||||||| || |
|
|
| T |
10793515 |
tacttaaaacaattgcaaaacgaatgtcctcaaaatggacctggaaataaccgtgtaaatttcgacccaactactcctgatacattggacaagaacttct |
10793416 |
T |
|
| Q |
220 |
acaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacacc |
280 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10793415 |
acaacaatcttcaggttaaaaagggtttgcttcaaagtgaccaagaattgttttcaacacc |
10793355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 11137489 - 11137734
Alignment:
| Q |
20 |
aggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgattatacgacttcgaaaatactggcaaacctgatccaactcttgacccaaca |
119 |
Q |
| |
|
|||||| |||||||| |||||||||||||| |||||| ||||||||||||| ||||| | ||| || |||||||||||||||||| | |||| |
|
|
| T |
11137489 |
aggtgctcatacattcggaagagcacgttgcactttcatcactgatcgattatacaacttcagcagtacaggaaaacctgatccaactcttaatacaact |
11137588 |
T |
|
| Q |
120 |
tacttaaaacagttgcaaaaacaatgtcctcaaaatggacctggaaataacgttgtcaatttcgatccaacaactcctgataaattagacaagaactact |
219 |
Q |
| |
|
|| ||| || | || | ||| ||||||| | |||||| ||||||| | | |||||| || ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
11137589 |
tatttacaagaattacgtaaaatatgtcctaatggtggaccaccaaataacctcgccaattttgacccaacgactcctgataaatttgacaagaactact |
11137688 |
T |
|
| Q |
220 |
acaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaaga |
265 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
11137689 |
actccaatcttcagggtaaaaagggtttgcttcagagtgaccaaga |
11137734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 11149919 - 11150021
Alignment:
| Q |
176 |
caatttcgatccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctca |
275 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||| |||||||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
11149919 |
caatttcgatccaacgactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaagggtttgctccaaagtgatcaagagttgttctca |
11150018 |
T |
|
| Q |
276 |
aca |
278 |
Q |
| |
|
||| |
|
|
| T |
11150019 |
aca |
11150021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 11156587 - 11156689
Alignment:
| Q |
176 |
caatttcgatccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctca |
275 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||| |||||||| ||||| |||||||| ||||| ||||||||| |
|
|
| T |
11156587 |
caatttcgatccaacgactcctgataaatttgacaagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtgatcaagagttgttctca |
11156686 |
T |
|
| Q |
276 |
aca |
278 |
Q |
| |
|
||| |
|
|
| T |
11156687 |
aca |
11156689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 183 - 278
Target Start/End: Original strand, 11145957 - 11146052
Alignment:
| Q |
183 |
gatccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaaca |
278 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| ||| |||||||||| ||||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
11145957 |
gatccaactactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaaaggtttgcttcaaagtgatcaagagttgttctcaaca |
11146052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University