View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13037_high_40 (Length: 278)

Name: NF13037_high_40
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13037_high_40
NF13037_high_40
[»] chr5 (10 HSPs)
chr5 (1-262)||(12521290-12521551)
chr5 (59-103)||(11040928-11040972)
chr5 (65-105)||(27565302-27565342)
chr5 (66-105)||(39257536-39257575)
chr5 (67-109)||(26516175-26516217)
chr5 (67-108)||(11457001-11457042)
chr5 (36-105)||(33459040-33459109)
chr5 (68-109)||(38338210-38338251)
chr5 (2-62)||(29116998-29117061)
chr5 (59-103)||(31723696-31723740)
[»] chr8 (4 HSPs)
chr8 (164-247)||(27729670-27729753)
chr8 (67-103)||(7008512-7008548)
chr8 (67-111)||(26055960-26056004)
chr8 (66-102)||(39274419-39274455)
[»] chr4 (8 HSPs)
chr4 (36-105)||(19422314-19422383)
chr4 (14-63)||(2169966-2170017)
chr4 (42-105)||(27123441-27123504)
chr4 (66-104)||(9316486-9316524)
chr4 (69-103)||(46053583-46053617)
chr4 (67-108)||(33640986-33641027)
chr4 (67-106)||(4243220-4243260)
chr4 (65-105)||(33534303-33534343)
[»] chr7 (5 HSPs)
chr7 (36-108)||(25507244-25507316)
chr7 (13-62)||(9872810-9872861)
chr7 (36-96)||(25558294-25558354)
chr7 (36-96)||(25558492-25558552)
chr7 (69-109)||(28340549-28340589)
[»] chr3 (14 HSPs)
chr3 (38-103)||(41155094-41155159)
chr3 (13-107)||(5430920-5431016)
chr3 (13-62)||(12985403-12985452)
chr3 (36-108)||(24158607-24158679)
chr3 (65-105)||(49587075-49587115)
chr3 (52-103)||(24625378-24625429)
chr3 (66-101)||(33965642-33965677)
chr3 (40-106)||(4534465-4534531)
chr3 (67-109)||(37308216-37308258)
chr3 (66-107)||(20504091-20504132)
chr3 (36-105)||(24235788-24235857)
chr3 (36-105)||(42536923-42536992)
chr3 (65-105)||(20874449-20874489)
chr3 (37-109)||(48528470-48528542)
[»] chr6 (7 HSPs)
chr6 (13-108)||(4006607-4006704)
chr6 (65-109)||(7354081-7354125)
chr6 (42-105)||(2460240-2460303)
chr6 (69-110)||(9027453-9027494)
chr6 (76-109)||(33500632-33500665)
chr6 (59-107)||(2027947-2027995)
chr6 (67-103)||(9041568-9041604)
[»] chr2 (6 HSPs)
chr2 (75-109)||(13056043-13056077)
chr2 (36-105)||(7936922-7936991)
chr2 (37-105)||(14316939-14317008)
chr2 (66-106)||(13869245-13869285)
chr2 (59-99)||(9996519-9996559)
chr2 (67-103)||(44869589-44869625)
[»] chr1 (8 HSPs)
chr1 (65-114)||(21516245-21516294)
chr1 (67-103)||(29794073-29794109)
chr1 (36-106)||(34619483-34619553)
chr1 (66-108)||(48133089-48133131)
chr1 (36-105)||(29046018-29046087)
chr1 (6-62)||(5160348-5160404)
chr1 (53-105)||(29665884-29665936)
chr1 (66-106)||(49365938-49365978)
[»] scaffold0459 (1 HSPs)
scaffold0459 (36-90)||(8279-8333)
[»] scaffold0366 (1 HSPs)
scaffold0366 (36-90)||(8203-8257)


Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 12521551 - 12521290
Alignment:
Q  1 aatagcttatacaaaacagtttgactctattttagtttgttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgtttatcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12521551 aatagcttatacaaaacagtttgactctattttagtttgttatagaaacaacttatacataagaatttatgctaaaagcacttaattaagctgtttatcc 12521452  T
Q  101 aaacagggctcaagacttcaaacgtagtagtttctaacgttgaaatgtaaaaataaggaaccttacctcactaatgtgaccactaattatcaaaggatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12521451 aaacagggctcaagacttcaaacgtagtagtttctaacgttgaaatgtaaaaataaggaaccttacctcactaatgtgaccactaattatcaaaggatat 12521352  T
Q  201 gtggccaagacaacaagtgttattctccagttcaaaaggaaggcaataataaacgaagcaac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12521351 gtggccaagacaacaagtgttattctccagttcaaaaggaaggcaataataaacgaagcaac 12521290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 11040972 - 11040928
Alignment:
Q  59 ataagaatttatgctaaaagcgcttaattaagctgtttatccaaa 103  Q
    |||||||||||||||| | ||||||||||||| ||||||||||||    
T  11040972 ataagaatttatgctataggcgcttaattaagttgtttatccaaa 11040928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 27565302 - 27565342
Alignment:
Q  65 atttatgctaaaagcgcttaattaagctgtttatccaaaca 105  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  27565302 atttatactataagcgcttaattaagctgtttatccaaaca 27565342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 39257536 - 39257575
Alignment:
Q  66 tttatgctaaaagcgcttaattaagctgtttatccaaaca 105  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  39257536 tttatgctataagcgcttaattaagttgtttatccaaaca 39257575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 26516217 - 26516175
Alignment:
Q  67 ttatgctaaaagcgcttaattaagctgtttatccaaacagggc 109  Q
    |||||||| ||||||||||||||| ||||||||||||| ||||    
T  26516217 ttatgctataagcgcttaattaagttgtttatccaaactgggc 26516175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 11457042 - 11457001
Alignment:
Q  67 ttatgctaaaagcgcttaattaagctgtttatccaaacaggg 108  Q
    |||||||| |||||||| ||||||||||||||||| ||||||    
T  11457042 ttatgctataagcgcttgattaagctgtttatccagacaggg 11457001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 33459040 - 33459109
Alignment:
Q  36 tttgttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgtttatccaaaca 105  Q
    ||||||||||||| |||||||||||||| |||||| | |  |  ||||| ||||||||| ||||||||||    
T  33459040 tttgttatagaaataacttatacataagcatttattccacgaatgcttatttaagctgtgtatccaaaca 33459109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 38338251 - 38338210
Alignment:
Q  68 tatgctaaaagcgcttaattaagctgtttatccaaacagggc 109  Q
    ||||||| || ||||||||||||||||| |||||||||||||    
T  38338251 tatgctataaacgcttaattaagctgttcatccaaacagggc 38338210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 29116998 - 29117061
Alignment:
Q  2 atagcttatac-aaaacagtttgactctattttag--tttgttatagaaacaacttatacataa 62  Q
    ||||||||||| |||||||||||||| |||||||   ||||||||||||| ||| |||||||||    
T  29116998 atagcttatacgaaaacagtttgactttattttatcttttgttatagaaataacatatacataa 29117061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 31723740 - 31723696
Alignment:
Q  59 ataagaatttatgctaaaagcgcttaattaagctgtttatccaaa 103  Q
    ||||||||||||| || |||||||||||||||  |||||||||||    
T  31723740 ataagaatttatgttataagcgcttaattaagtcgtttatccaaa 31723696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 27729753 - 27729670
Alignment:
Q  164 tacctcactaatgtgaccactaattatcaaaggatatgtggccaagacaacaagtgttattctccagttcaaaaggaaggcaat 247  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||    
T  27729753 tacctcaccaatgtgaccacttattatcaaaggatatgtggccaagacaacaagtgttatcctccagttcaaaatgaatgcaat 27729670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 7008548 - 7008512
Alignment:
Q  67 ttatgctaaaagcgcttaattaagctgtttatccaaa 103  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  7008548 ttatgctataagcgcttaattaagttgtttatccaaa 7008512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 26056004 - 26055960
Alignment:
Q  67 ttatgctaaaagcgcttaattaagctgtttatccaaacagggctc 111  Q
    |||||||| |||||| |||||||| |||| |||||||||||||||    
T  26056004 ttatgctataagcgcgtaattaagttgttgatccaaacagggctc 26055960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 39274455 - 39274419
Alignment:
Q  66 tttatgctaaaagcgcttaattaagctgtttatccaa 102  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  39274455 tttatgctagaagcgcttaattaagctatttatccaa 39274419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 19422383 - 19422314
Alignment:
Q  36 tttgttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgtttatccaaaca 105  Q
    ||||||||||||| |||||||||||||| ||||||   | ||||||||||||||||||||||||||||||    
T  19422383 tttgttatagaaataacttatacataagcatttatatgataagcgcttaattaagctgtttatccaaaca 19422314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 2170017 - 2169966
Alignment:
Q  14 aaacagtttgactctattttagttt--gttatagaaacaacttatacataag 63  Q
    ||||||||||||||||||||| |||  ||||||||||||| |||||||||||    
T  2170017 aaacagtttgactctattttattttttgttatagaaacaatttatacataag 2169966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 27123441 - 27123504
Alignment:
Q  42 atagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgtttatccaaaca 105  Q
    ||||||| | |||||||||||||||| |||||  | || |||||||||||||||| ||||||||    
T  27123441 atagaaatagcttatacataagaattcatgctgtatgcacttaattaagctgtttttccaaaca 27123504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 9316524 - 9316486
Alignment:
Q  66 tttatgctaaaagcgcttaattaagctgtttatccaaac 104  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  9316524 tttatgctataagtgcttaattaagctgtttatccaaac 9316486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 46053617 - 46053583
Alignment:
Q  69 atgctaaaagcgcttaattaagctgtttatccaaa 103  Q
    |||||| ||||||||||||||||||||||||||||    
T  46053617 atgctataagcgcttaattaagctgtttatccaaa 46053583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 33641027 - 33640986
Alignment:
Q  67 ttatgctaaaagcgcttaattaagctgtttatccaaacaggg 108  Q
    |||| ||| |||| ||||||||||||||||||||||||||||    
T  33641027 ttattctataagcacttaattaagctgtttatccaaacaggg 33640986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 4243260 - 4243220
Alignment:
Q  67 ttatgctaa-aagcgcttaattaagctgtttatccaaacag 106  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  4243260 ttatgctaataagcacttaattaagctgtttatccaaacag 4243220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 33534303 - 33534343
Alignment:
Q  65 atttatgctaaaagcgcttaattaagctgtttatccaaaca 105  Q
    ||||||||||||||| ||||||||||||||| |||| ||||    
T  33534303 atttatgctaaaagcacttaattaagctgttcatcccaaca 33534343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 25507316 - 25507244
Alignment:
Q  36 tttgttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgtttatccaaacaggg 108  Q
    |||| |||||||| |||||||||||||  | |||| ||||||| ||||||||||| |||||||||||||||||    
T  25507316 tttggtatagaaataacttatacataaacacttatcctaaaagtgcttaattaagttgtttatccaaacaggg 25507244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 9872861 - 9872810
Alignment:
Q  13 aaaacagtttgactctattttag--tttgttatagaaacaacttatacataa 62  Q
    |||||||||||||| |||||||   ||||||||||||||||| |||||||||    
T  9872861 aaaacagtttgactttattttatattttgttatagaaacaacatatacataa 9872810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 25558294 - 25558354
Alignment:
Q  36 tttgttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgttt 96  Q
    |||| |||||||| |||||||||||||  | |||| ||||||| ||||||||||| |||||    
T  25558294 tttggtatagaaataacttatacataaacacttatcctaaaagtgcttaattaagttgttt 25558354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 25558492 - 25558552
Alignment:
Q  36 tttgttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgttt 96  Q
    |||| |||||||| |||||||||||||  | |||| ||||||| ||||||||||| |||||    
T  25558492 tttggtatagaaataacttatacataaacacttatcctaaaagtgcttaattaagttgttt 25558552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 28340549 - 28340589
Alignment:
Q  69 atgctaaaagcgcttaattaagctgtttatccaaacagggc 109  Q
    |||||| |||| |||||||||||||| ||||||||||||||    
T  28340549 atgctataagcacttaattaagctgtatatccaaacagggc 28340589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 41155159 - 41155094
Alignment:
Q  38 tgttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgtttatccaaa 103  Q
    ||||||||||| |||||| |||||||||||||| |   |||||| |||||||||||||||||||||    
T  41155159 tgttatagaaataacttacacataagaatttatacagtaagcgcctaattaagctgtttatccaaa 41155094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 5431016 - 5430920
Alignment:
Q  13 aaaacagtttgactctattttagttt--gttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgtttatccaaacagg 107  Q
    |||||||||||||| | ||||| |||  ||||||||||   |||||||||||| | ||||| || |||| |||||||||| || |||||||||||||    
T  5431016 aaaacagtttgactttcttttactttctgttatagaaatggcttatacataagcacttatgatataagctcttaattaagttgcttatccaaacagg 5430920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 12985403 - 12985452
Alignment:
Q  13 aaaacagtttgactctattttagtttgttatagaaacaacttatacataa 62  Q
    ||||||||||  || ||||||| |||||||||||||||||||||||||||    
T  12985403 aaaacagtttatctttattttattttgttatagaaacaacttatacataa 12985452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 24158607 - 24158679
Alignment:
Q  36 tttgttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgtttatccaaacaggg 108  Q
    ||||||||||||| |||||||||||||| | ||||   | |||  |||||||||| |||||||||||||||||    
T  24158607 tttgttatagaaataacttatacataagcacttatatgacaagaacttaattaaggtgtttatccaaacaggg 24158679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 49587075 - 49587115
Alignment:
Q  65 atttatgctaaaagcgcttaattaagctgtttatccaaaca 105  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  49587075 atttatgctagaagcgcttaattaaactgtttatccaaaca 49587115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 24625378 - 24625429
Alignment:
Q  52 cttatacataagaatttatgctaaaagcgcttaattaagctgtttatccaaa 103  Q
    |||||||||||| | |||||||| ||||||||||||||| || |||||||||    
T  24625378 cttatacataagcacttatgctataagcgcttaattaagttgcttatccaaa 24625429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 33965642 - 33965677
Alignment:
Q  66 tttatgctaaaagcgcttaattaagctgtttatcca 101  Q
    ||||||||| ||||||||||||||||||||||||||    
T  33965642 tttatgctataagcgcttaattaagctgtttatcca 33965677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 4534465 - 4534531
Alignment:
Q  40 ttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgtttatccaaacag 106  Q
    ||||| ||| ||||||||| |||| | |||| ||| ||| ||||||||||| |||||||||||||||    
T  4534465 ttatataaataacttatacgtaagcacttatactataagtgcttaattaagttgtttatccaaacag 4534531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 37308216 - 37308258
Alignment:
Q  67 ttatgctaaaagcgcttaattaagctgtttatccaaacagggc 109  Q
    |||||||| |||| |||||||||| ||||||||||||||||||    
T  37308216 ttatgctataagcacttaattaagttgtttatccaaacagggc 37308258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 20504132 - 20504091
Alignment:
Q  66 tttatgctaaaagcgcttaattaagctgtttatccaaacagg 107  Q
    ||||| ||| ||||||||||||||||||||||| ||||||||    
T  20504132 tttatactataagcgcttaattaagctgtttattcaaacagg 20504091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 24235788 - 24235857
Alignment:
Q  36 tttgttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgtttatccaaaca 105  Q
    ||||||||||||| |||||||||| |||   ||||| || || | |||||||||| ||||||||||||||    
T  24235788 tttgttatagaaataacttatacacaagtgcttatgttataaacacttaattaagttgtttatccaaaca 24235857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 42536992 - 42536923
Alignment:
Q  36 tttgttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgtttatccaaaca 105  Q
    |||||||||| |  |||||||||||||||| ||||||||  | |  ||||||||||| ||||||||||||    
T  42536992 tttgttataggattaacttatacataagaacttatgctatgaacatttaattaagctatttatccaaaca 42536923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 20874449 - 20874489
Alignment:
Q  65 atttatgctaaaagcgcttaattaagctgtttatccaaaca 105  Q
    |||||||||| ||| ||||||||||| ||||||||||||||    
T  20874449 atttatgctataagtgcttaattaagttgtttatccaaaca 20874489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 48528542 - 48528470
Alignment:
Q  37 ttgttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgtttatccaaacagggc 109  Q
    |||||||||||| | |||||||||||| | ||||   | |||| ||||||| || ||||||||||||||||||    
T  48528542 ttgttatagaaatagcttatacataagtacttatatgataagctcttaattcagttgtttatccaaacagggc 48528470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 4006704 - 4006607
Alignment:
Q  13 aaaacagtttgactctattttag--tttgttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgtttatccaaacaggg 108  Q
    |||||| ||||||| |||||||   ||||||||||||| | ||||| |||||| | |||||||| ||| | ||||||||| || ||||||||||||||    
T  4006704 aaaacaatttgactttattttatcatttgttatagaaatatcttatgcataagcacttatgctataagggattaattaagttgcttatccaaacaggg 4006607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 7354125 - 7354081
Alignment:
Q  65 atttatgctaaaagcgcttaattaagctgtttatccaaacagggc 109  Q
    |||||||||| ||||||||||  ||||||||||||||||||||||    
T  7354125 atttatgctataagcgcttaacaaagctgtttatccaaacagggc 7354081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 2460240 - 2460303
Alignment:
Q  42 atagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgtttatccaaaca 105  Q
    ||||||| | |||||||||||||||| |||||  | || |||||||||||||||| ||||||||    
T  2460240 atagaaatagcttatacataagaattcatgctgtatgcacttaattaagctgtttttccaaaca 2460303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 9027494 - 9027453
Alignment:
Q  69 atgctaaaagcgcttaattaagctgtttatccaaacagggct 110  Q
    |||||| ||||||||| |||| ||||||||||||||||||||    
T  9027494 atgctataagcgcttacttaaactgtttatccaaacagggct 9027453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 33500632 - 33500665
Alignment:
Q  76 aagcgcttaattaagctgtttatccaaacagggc 109  Q
    |||| |||||||||||||||||||||||||||||    
T  33500632 aagcacttaattaagctgtttatccaaacagggc 33500665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 2027947 - 2027995
Alignment:
Q  59 ataagaatttatgctaaaagcgcttaattaagctgtttatccaaacagg 107  Q
    ||||| ||||||| || ||||||||||| || |||||||||||||||||    
T  2027947 ataagcatttatgatataagcgcttaatgaaactgtttatccaaacagg 2027995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 9041568 - 9041604
Alignment:
Q  67 ttatgctaaaagcgcttaattaagctgtttatccaaa 103  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  9041568 ttatgctataagcgcttaattaagttgtttatccaaa 9041604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 13056077 - 13056043
Alignment:
Q  75 aaagcgcttaattaagctgtttatccaaacagggc 109  Q
    |||||||||||||||||||||||||||||||||||    
T  13056077 aaagcgcttaattaagctgtttatccaaacagggc 13056043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 7936991 - 7936922
Alignment:
Q  36 tttgttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgtttatccaaaca 105  Q
    |||||||||||||    ||||||||||| | ||||| ||||||| |||||||||| ||||||||||||||    
T  7936991 tttgttatagaaatggtttatacataagcacttatgttaaaagcacttaattaagttgtttatccaaaca 7936922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 14316939 - 14317008
Alignment:
Q  37 ttgttatagaaacaacttataca-taagaatttatgctaaaagcgcttaattaagctgtttatccaaaca 105  Q
    |||| ||||||||| |||||||| |||| | |||||||| ||||||||||||||  ||||||||||||||    
T  14316939 ttgtgatagaaacatcttatacaataagcacttatgctataagcgcttaattaatttgtttatccaaaca 14317008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 13869245 - 13869285
Alignment:
Q  66 tttatgctaaaagcgcttaattaagctgtttatccaaacag 106  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  13869245 tttatgctataagcgcttaattgagctgtttatccaaacag 13869285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 9996559 - 9996519
Alignment:
Q  59 ataagaatttatgctaaaagcgcttaattaagctgtttatc 99  Q
    |||||| ||||||||||| ||||||||||||| ||||||||    
T  9996559 ataagagtttatgctaaacgcgcttaattaagttgtttatc 9996519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 44869589 - 44869625
Alignment:
Q  67 ttatgctaaaagcgcttaattaagctgtttatccaaa 103  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  44869589 ttatgctaaaagtgcttaattaagttgtttatccaaa 44869625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 21516294 - 21516245
Alignment:
Q  65 atttatgctaaaagcgcttaattaagctgtttatccaaacagggctcaag 114  Q
    ||||||| || ||||| ||||||||| |||||||||||||||||||||||    
T  21516294 atttatgttataagcgtttaattaagttgtttatccaaacagggctcaag 21516245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 29794073 - 29794109
Alignment:
Q  67 ttatgctaaaagcgcttaattaagctgtttatccaaa 103  Q
    |||||||| ||||||||||||||||||||||||||||    
T  29794073 ttatgctataagcgcttaattaagctgtttatccaaa 29794109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 34619483 - 34619553
Alignment:
Q  36 tttgttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgtttatccaaacag 106  Q
    |||||||||||||   |||||||||||| | |||||||| ||||    |||||||||||||||||||||||    
T  34619483 tttgttatagaaatggcttatacataagcaattatgctataagctgcaaattaagctgtttatccaaacag 34619553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 48133089 - 48133131
Alignment:
Q  66 tttatgctaaaagcgcttaattaagctgtttatccaaacaggg 108  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||    
T  48133089 tttatgctataagcgcttaattaagttgtctatccaaacaggg 48133131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 29046018 - 29046087
Alignment:
Q  36 tttgttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaagctgtttatccaaaca 105  Q
    ||||||||||||| | |||||||| ||| | |||| | | ||| |||||||||| |||||||||||||||    
T  29046018 tttgttatagaaatatcttatacacaagcacttatacgataagtgcttaattaatctgtttatccaaaca 29046087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 5160404 - 5160348
Alignment:
Q  6 cttatacaaaacagtttgactctattttagtttgttatagaaacaacttatacataa 62  Q
    |||||| |||||||||||||| |||| ||  |||||||||||| | |||||||||||    
T  5160404 cttatataaaacagtttgactttattatatgttgttatagaaatagcttatacataa 5160348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 29665884 - 29665936
Alignment:
Q  53 ttatacataagaatttatgctaaaagcgcttaattaagctgtttatccaaaca 105  Q
    |||||||||||   |||||||| ||| | ||||||||||||||||||||||||    
T  29665884 ttatacataagcgcttatgctataagtgtttaattaagctgtttatccaaaca 29665936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 49365938 - 49365978
Alignment:
Q  66 tttatgctaaaagcgcttaattaagctgtttatccaaacag 106  Q
    ||||||||| |||||||||| |||| |||||||||||||||    
T  49365938 tttatgctataagcgcttaactaagttgtttatccaaacag 49365978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 8279 - 8333
Alignment:
Q  36 tttgttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaag 90  Q
    ||||||||||||| | |||||||||||| | |||||||| |||| ||||||||||    
T  8279 tttgttatagaaatagcttatacataagtagttatgctataagcacttaattaag 8333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 8203 - 8257
Alignment:
Q  36 tttgttatagaaacaacttatacataagaatttatgctaaaagcgcttaattaag 90  Q
    ||||||||||||| | |||||||||||| | |||||||| |||| ||||||||||    
T  8203 tttgttatagaaatagcttatacataagtagttatgctataagcacttaattaag 8257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University