View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_high_42 (Length: 249)
Name: NF13037_high_42
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 86 - 241
Target Start/End: Complemental strand, 29713703 - 29713548
Alignment:
| Q |
86 |
ataggttttagagaataatattttggaaaaagtttatttaaaacccnnnnnnnagatcgaaaatcaannnnnnnnaaccgaactcatccaacctcccact |
185 |
Q |
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| T |
29713703 |
ataggttttagagaataatattttggaaaaagtttatttaaaaccctttttttagatcgaaaatcaattttttttaaccgaactcatccaacctcccact |
29713604 |
T |
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| Q |
186 |
acataagtaatctcaaagtgtcgttataagtgctacttttaaattttgattcatct |
241 |
Q |
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| T |
29713603 |
acataagtaatctcaaagtgtcattataagtgctacttttaaattttgattcatct |
29713548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 27274598 - 27274673
Alignment:
| Q |
166 |
aactcatccaacctcccactacataagtaatctcaaagtgtcgttataagtgctacttttaaattttgattcatct |
241 |
Q |
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| T |
27274598 |
aactcatccaacctcccactatataagtaatctcaaagtgtcattataagtactacttttaaattttgattcatct |
27274673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 29713786 - 29713747
Alignment:
| Q |
3 |
atttttgatgattagtgtagcactactcattatacacatg |
42 |
Q |
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| T |
29713786 |
atttttgatgattagtgtagcactactcattatacacatg |
29713747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 55801715 - 55801795
Alignment:
| Q |
161 |
aaccgaactcatccaacctcccactacataagtaatctcaaagtgtcgttataagtgctacttttaaattttgattcatct |
241 |
Q |
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| T |
55801715 |
aaccgaactcatccaacctcccactacataagtaatctcaaagtgtcattataagtgctacttttaaattttgattcatct |
55801795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 55801640 - 55801684
Alignment:
| Q |
86 |
ataggttttagagaataatattttggaaaaagtttatttaaaacc |
130 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
55801640 |
atagattttagagaataatattttggaaaaagtttatttaaaacc |
55801684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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