View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_high_44 (Length: 243)
Name: NF13037_high_44
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_high_44 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 1948199 - 1947987
Alignment:
| Q |
13 |
caacaggtcttaggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgatta |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1948199 |
caacaggtcttaggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgatta |
1948100 |
T |
|
| Q |
113 |
tgcagcctactttaaagcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaggcagtgtggaagaaaaaatagtagatcattt |
212 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1948099 |
tgcagcctactttaaagcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaggcagtgtggaagaaaaaatagtagatcattt |
1948000 |
T |
|
| Q |
213 |
tcctaatacaaat |
225 |
Q |
| |
|
||||||||||||| |
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|
| T |
1947999 |
tcctaatacaaat |
1947987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 2029836 - 2030020
Alignment:
| Q |
15 |
acaggtcttaggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatg |
114 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| || |
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| T |
2029836 |
acaggccttaggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaacaatcctcccaaatacagagaaaccacagttgctgattttg |
2029935 |
T |
|
| Q |
115 |
cagcctactttaaagcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaggcagtgtggaagaaaaaa |
199 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
2029936 |
cagcctactttaatgcaaaaggactagatggtacttctgctcttacacattacaagatttgaactagacagtgtagaagaaaaaa |
2030020 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 10769486 - 10769678
Alignment:
| Q |
18 |
ggtcttaggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcag |
117 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||||| |||||||||||||||||| | |||||| ||| ||| ||||||||| |||||||||| |||| || |
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|
| T |
10769486 |
ggtcataggtcatcctcaaagctctatggacctataaaggaactattatcagaagacaatcctcccatatacagagaaacctcagttgctgactatgtag |
10769585 |
T |
|
| Q |
118 |
cctactttaaagcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaggcagtgtggaagaaaaaatagtagatcat |
210 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| |||| |
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|
| T |
10769586 |
cctattttgaagcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaagcaatgtggaagaaaaaatattagctcat |
10769678 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 2051982 - 2052164
Alignment:
| Q |
28 |
catcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcagcctactttaa |
127 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||| | |||||| ||||||| |||||||| | ||||||||||||| |||||||||| |
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| T |
2051982 |
catcttcaaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaacttctgttgctgattatgtagcctactttcg |
2052081 |
T |
|
| Q |
128 |
agcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaggcagtgtggaagaaaaaatagtagatcat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| ||| |||| |
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|
| T |
2052082 |
agcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaagcaatgtggcagaaaaaatattagctcat |
2052164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 2034754 - 2034915
Alignment:
| Q |
15 |
acaggtcttaggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatg |
114 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||||||||| |||||||||||||||||| | |||||| | ||||| |||||||| || ||| ||||||||| |
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|
| T |
2034754 |
acaggtattaggtcatcctcaaagctctatggacctataaaggaactattatcagaagacaatcctcctaaatacagagaaacaacggtttctgattatg |
2034853 |
T |
|
| Q |
115 |
cagcctactttaaagcaaaaggactagatggtacttctgctcttacacattacaagatttga |
176 |
Q |
| |
|
||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2034854 |
tagcttactttgaaaaaaaaggactagatggtacttctgctcttacacattacaagatttga |
2034915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 2048083 - 2048259
Alignment:
| Q |
23 |
taggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcagcctac |
122 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| ||||||||||||||| | |||||| | ||||| ||||||||||||||||| || |||| | ||||| |
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|
| T |
2048083 |
taggtcatcttcaaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaaccacagttgcagactatgtaacctac |
2048182 |
T |
|
| Q |
123 |
tttaaagcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaggcagtgtggaagaaaaaa |
199 |
Q |
| |
|
||| | ||||||| | |||||||||||||||||||||||||||| |||||||||| | || |||||||||||||| |
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|
| T |
2048183 |
tttgtaaaaaaaggattggatggtacttctgctcttacacattacaggatttgaactggacaatgtggaagaaaaaa |
2048259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 2038832 - 2038993
Alignment:
| Q |
15 |
acaggtcttaggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatg |
114 |
Q |
| |
|
||||||| | || |||| ||||||||||||||||| || ||||| |||||||||||| | |||||| | ||||| |||||||||||||||||||| ||| |
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|
| T |
2038832 |
acaggtcattggtcatcctcaaagctctatggaccaataaaggatctattatcagaagacaatcctcctaaatacagagaaaccacagttgctgactatc |
2038931 |
T |
|
| Q |
115 |
cagcctactttaaagcaaaaggactagatggtacttctgctcttacacattacaagatttga |
176 |
Q |
| |
|
||| |||||| || ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2038932 |
tagcgtactttgtagaaaaaggattagatggtacttctgctcttacacattacaagatttga |
2038993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 2059043 - 2059192
Alignment:
| Q |
28 |
catcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcagcctactttaa |
127 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||||||||||| | |||||| ||||||| |||||||| | ||||||||||||| ||||| |||| |
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|
| T |
2059043 |
catcttcaaaactctatggaccaatgaaggaactattatcagaagacaatcctcccaaatacagagaaacttctgttgctgattatgtagcctgctttcg |
2059142 |
T |
|
| Q |
128 |
agcaaaaggactagatggtacttctgctcttacacattacaagatttgaa |
177 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
2059143 |
agcaaaaagactagatggtacttctgctcttacacatcacatgatttgaa |
2059192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 2055839 - 2056013
Alignment:
| Q |
28 |
catcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcagc---ctactt |
124 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| ||||||||| | |||||| | ||||| | |||||| || ||||||||||||| ||| |||||| |
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|
| T |
2055839 |
catcctcaaagctctatggaccaatgaaggaactgttatcagaagacaatcctcctaaatacaaagaaactactgttgctgattatgtagcctactactt |
2055938 |
T |
|
| Q |
125 |
taaagcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaggcagtgtggaagaaaaaa |
199 |
Q |
| |
|
| |||||||||| |||||||||||||||| ||| ||||||||| ||||||||| ||| ||||| |||||||| |
|
|
| T |
2055939 |
tcgagcaaaaggagtagatggtacttctgcacttgaacattacaaaatttgaactgagcaatgtggtagaaaaaa |
2056013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 2030932 - 2030984
Alignment:
| Q |
16 |
caggtcttaggccatcgtcaaagctctatggacctatgaaggaactattatca |
68 |
Q |
| |
|
||||||||||||||| |||| ||||||||| ||| || || |||||||||||| |
|
|
| T |
2030932 |
caggtcttaggccattgtcagagctctatgtaccaataaaagaactattatca |
2030984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 48904959 - 48904798
Alignment:
| Q |
33 |
tcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcagcctacttt---aaag |
129 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| ||| | |||||| ||||||| |||||||||||| ||| || ||||||| ||||| | || |
|
|
| T |
48904959 |
tcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatgcagtctactctccagcag |
48904860 |
T |
|
| Q |
130 |
caaaaggactagatggtacttctgctcttacacattacaagatttgaactaggcagtgtgga |
191 |
Q |
| |
|
||||| |||||| | ||||||||| |||| |||||||||| |||||||||| ||| |||||| |
|
|
| T |
48904859 |
caaaaagactaggttgtacttctgttctttcacattacaaaatttgaactaagcaatgtgga |
48904798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 176
Target Start/End: Complemental strand, 28734983 - 28734842
Alignment:
| Q |
35 |
aaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcagcctactttaaagcaaaa |
134 |
Q |
| |
|
|||||| ||||||||||| | ||| ||||||||||| | || ||| ||| ||||||||||||||| |||||||||||| ||||||||| |||||| |
|
|
| T |
28734983 |
aaagctttatggacctataacagaattattatcagaagacaaccctcccagatatagagaaaccacgtttgctgattatgtagcctacttatgtgcaaaa |
28734884 |
T |
|
| Q |
135 |
ggactagatggtacttctgctcttacacattacaagatttga |
176 |
Q |
| |
|
|| || ||||| ||||||| |||| ||||| |||| ||||| |
|
|
| T |
28734883 |
gggcttgatggcacttctgttcttcaacatttcaagctttga |
28734842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 158
Target Start/End: Complemental strand, 28699483 - 28699360
Alignment:
| Q |
35 |
aaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcagcctactttaaagcaaaa |
134 |
Q |
| |
|
|||||| ||||||||||| | ||| ||||||||||||| || ||| ||| ||| | ||||||||| |||||||||| | ||||||| | | |||||| |
|
|
| T |
28699483 |
aaagctttatggacctataacagaattattatcagaaaacaaccctcccagatacaaagaaaccactgttgctgattttatagcctacgtgtatgcaaaa |
28699384 |
T |
|
| Q |
135 |
ggactagatggtacttctgctctt |
158 |
Q |
| |
|
|| || ||||| ||||||| |||| |
|
|
| T |
28699383 |
gggcttgatggcacttctgttctt |
28699360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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