View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_high_47 (Length: 238)
Name: NF13037_high_47
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_high_47 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 29713819 - 29714045
Alignment:
| Q |
1 |
tataggcatccattttgtaatgcttcaaagttcaaattataagcatccctcttgtaggttaatgcttcaaagttcaaataatctcttctct-----caca |
95 |
Q |
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| T |
29713819 |
tataggcatccattttgtaatgcttcaaagttcaaattataagcatccttcttgtaggctaatgcttcaaagttcaaataatctcttctcttagctcaca |
29713918 |
T |
|
| Q |
96 |
tgtttttcataaagataattcatatcgtagtcttccatgatcgtaaacatatatattagaagaaaaatatatgtattcattattgaagatttatgcattg |
195 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29713919 |
tgtttttcataaagataattcatatcgtagtctttcatgatcgtaaacatatatattagaagaaaaatatatgtattcattattgaagatttatgtattg |
29714018 |
T |
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| Q |
196 |
catgcttagaaaagaaagaaaacctaa |
222 |
Q |
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| T |
29714019 |
catgcttagaaaagaaagaaaacctaa |
29714045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 36 - 185
Target Start/End: Complemental strand, 27274240 - 27274091
Alignment:
| Q |
36 |
attataagcatccctcttgtaggttaatgcttcaaagttcaaataatctcttctctcacatgtttttcataaagataattcatatcgtagtcttccatga |
135 |
Q |
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| T |
27274240 |
attataagcatccctgttgtaggctaatactacaaagttcaaacaatctcttatctcacatgttttccataaagataattcgtatcttagtcttccatga |
27274141 |
T |
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| Q |
136 |
tcgtaaacatatatattagaagaaaaatatatgtattcattattgaagat |
185 |
Q |
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| T |
27274140 |
tcagaaacatatatattagaagaaaaatctatgtgttcattattgaagat |
27274091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 55801540 - 55801336
Alignment:
| Q |
18 |
taatgcttcaaagttcaaattataagcatccctcttgtaggttaatgcttcaaagttcaaataatctcttctctcacatgtttttcataaagataattca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55801540 |
taatgcttcaaagttcaaattataagcatccctcttgtaggctaatgcttcaaagttcaaataatctcttctctcacatgtttttcataaagataattca |
55801441 |
T |
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| Q |
118 |
tatcgtagtcttccatgatcgtaaacatatatattagaagaaaaatatatgtattcattattgaagatttatgcattgcatgcttagaaaagaaagaaaa |
217 |
Q |
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|||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
55801440 |
tatcttagtcttccatgatcataaacttatatattagaagaaaaatatatgtattcattattgaagatttatgtattgcatgcttagaaaagaaagaaaa |
55801341 |
T |
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| Q |
218 |
cctaa |
222 |
Q |
| |
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||||| |
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| T |
55801340 |
cctaa |
55801336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 55801564 - 55801521
Alignment:
| Q |
36 |
attataagcatccctcttgtaggttaatgcttcaaagttcaaat |
79 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
55801564 |
attataagcatcccttttgtaggctaatgcttcaaagttcaaat |
55801521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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