View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_high_5 (Length: 589)
Name: NF13037_high_5
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_high_5 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 528; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 18 - 589
Target Start/End: Complemental strand, 6284663 - 6284092
Alignment:
| Q |
18 |
ccaactttaaaaaccaagaggtaatgatctgatatatccctcgataagacccaccaagccacataaccctaattgttagaccattttttcttgataatta |
117 |
Q |
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| T |
6284663 |
ccaactttaaaaaccaagaggtaatgatctgatatatccctcgataagacccaccaagccacataaccctaattgttagaccattttttcttgataatta |
6284564 |
T |
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| Q |
118 |
gagctctatcaatatgactcatcgcactcccatttgaattataccaagtaaatctacgaccagtagcggtcacatccagcatgtccacctccctcaagaa |
217 |
Q |
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| T |
6284563 |
gagctctatcaatatgactcatcgcactcccatttgaattataccaagtaaatctacgaccagtagcggtcacatccagcatgtccacctccctcaagaa |
6284464 |
T |
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| Q |
218 |
attattaaaaagaattcattttcaatagttgtcccgaagaagcttcaaaatttatcccccttctctctttcaaactacacacgcattaaaatcacccacc |
317 |
Q |
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| T |
6284463 |
attattaaaaagagttcattttcaatggttgtcccgaagaagcttcaaaatttatcccccttctctctttcaaactacacacgcattaaaatcacccacc |
6284364 |
T |
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| Q |
318 |
gaacaccaagctccttctctcaaagtatctgtaaccatgaaaagattctcacagaatctcctctttgcaattatatcatatttggaatagatataatggc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6284363 |
gaacaccaagctccttctctcaaagtatctgtaaccatcaaaagattctcacagaatctcctctttgcaattatatcatatttggaatagatataatggc |
6284264 |
T |
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| Q |
418 |
aaaagaacatttttaaaagaatcctcacaccaagcacaccccgaaaaaaccctcccacacgaaagatatcaaccttttgttggcgcaccaactagttaat |
517 |
Q |
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| T |
6284263 |
aaaagaacatttttaaaagaatcctcactccaagcacaccccgacaaaaccctcccacgcgaaagatatcaaccttttgttggcgcaccaactagttaat |
6284164 |
T |
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| Q |
518 |
cgttttccttttcgatcttccccaagcctctcacattataaatcaacacaattatttaccactgcttgcttt |
589 |
Q |
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| T |
6284163 |
cattttccttttcgatcttccccaagcttctcacattataaatcaatacaatcattgaccactgcttgcttt |
6284092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 99 - 411
Target Start/End: Complemental strand, 6306077 - 6305775
Alignment:
| Q |
99 |
cattttttcttgataattagagctctatcaatatgactcatcgcactcccatttgaattataccaagtaaatctacgaccagtagcggtcacatccagca |
198 |
Q |
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| T |
6306077 |
cattttttcttt-taatttgacctttatcaatatgactcatcgcactcccatttaaattataccaagtaaatctacgatctagaggggtcacatccacca |
6305979 |
T |
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| Q |
199 |
tgtccacctccctcaagaaattattaaaaagaattcattttcaatagttgtcccgaagaagcttcaaaatttatcccccttctctcttt-caaactacac |
297 |
Q |
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| T |
6305978 |
agtccacctccc--------ttattgaaaa-tattcatttctaactgttgtcccaaagaagcttccaaatttattccccttccccctttccgaactacac |
6305888 |
T |
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| Q |
298 |
acgcattaaaatcacccaccgaacaccaagctccttctctcaaagtatctgtaaccatgaaaagattctcacagaatctcctctttgcaattatatcata |
397 |
Q |
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| T |
6305887 |
gcgtatt-aaatcatccatcgaacaccattctccttctcacaaagtatttctaaccatcaaaagattcccgcacaacctcgtctttgccattatatcaca |
6305789 |
T |
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| Q |
398 |
tttggaatagatat |
411 |
Q |
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||| ||||| |||| |
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| T |
6305788 |
tttagaatatatat |
6305775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 6305719 - 6305642
Alignment:
| Q |
489 |
accttttgttggcgcaccaactagttaatcgttttccttttcgatcttccccaagcctctcacattataaatcaacacaat |
569 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||| || |||||||||| ||||||||||||||||||| |
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| T |
6305719 |
acctttttttggcgcaccaactagttaatcattttccttttcgatc-tctccaagcctct--cattataaatcaacacaat |
6305642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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