View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13037_high_50 (Length: 210)

Name: NF13037_high_50
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13037_high_50
NF13037_high_50
[»] chr5 (1 HSPs)
chr5 (142-203)||(14498028-14498089)
[»] chr8 (4 HSPs)
chr8 (138-189)||(29284818-29284869)
chr8 (138-185)||(29244684-29244731)
chr8 (144-189)||(29232701-29232746)
chr8 (141-189)||(29356710-29356758)
[»] chr2 (2 HSPs)
chr2 (138-190)||(30910631-30910683)
chr2 (139-190)||(30920051-30920102)


Alignment Details
Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 14498028 - 14498089
Alignment:
Q  142 acatacctgaattgtcttaatagaaggtttattgatctgttgaagacgatatctgatgatgt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14498028 acatacctgaattgtcttaatagaaggtttattgatctgttgaagacgatatcttatgatgt 14498089  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 29284869 - 29284818
Alignment:
Q  138 tttaacatacctgaattgtcttaatagaaggtttattgatctgttgaagacg 189  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||||||||    
T  29284869 tttaacatacctgaattgtcttaatagctggtttgttgatctgttgaagacg 29284818  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 29244731 - 29244684
Alignment:
Q  138 tttaacatacctgaattgtcttaatagaaggtttattgatctgttgaa 185  Q
    |||||||||||||||||||||||||||  || || |||||||||||||    
T  29244731 tttaacatacctgaattgtcttaatagctggcttgttgatctgttgaa 29244684  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 29232746 - 29232701
Alignment:
Q  144 atacctgaattgtcttaatagaaggtttattgatctgttgaagacg 189  Q
    ||||||||||||||||||||| ||| || || ||||||||||||||    
T  29232746 atacctgaattgtcttaataggaggcttgttaatctgttgaagacg 29232701  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 29356758 - 29356710
Alignment:
Q  141 aacatacctgaattgtcttaatagaaggtttattgatctgttgaagacg 189  Q
    ||||| ||||||||||||||| || ||| ||||||| ||||||||||||    
T  29356758 aacatgcctgaattgtcttaacagcaggcttattgagctgttgaagacg 29356710  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 30910631 - 30910683
Alignment:
Q  138 tttaacatacctgaattgtcttaatagaaggtttattgatctgttgaagacga 190  Q
    |||||||||| ||||||||||||| || ||| || ||||||||||||||||||    
T  30910631 tttaacatacttgaattgtcttaacagcaggcttgttgatctgttgaagacga 30910683  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 30920051 - 30920102
Alignment:
Q  139 ttaacatacctgaattgtcttaatagaaggtttattgatctgttgaagacga 190  Q
    ||||||||| ||||||||||||| || ||| |||||||| ||||||||||||    
T  30920051 ttaacatacttgaattgtcttaacagcaggcttattgatttgttgaagacga 30920102  T

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