View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13037_high_9 (Length: 493)
Name: NF13037_high_9
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 5195282 - 5195675
Alignment:
| Q |
1 |
ataatgacacttgcttgaatcccaattggtatgttaacaaattatactcaaccagaccaaaatagaatcattaatccaagacaaaacatgaaagaagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5195282 |
ataatgacacttgcttgaatcccaattggtatgttaacaaattatactcaaccagaccaaaatagaatcattaatccaagacaaaacatgaaagaagaaa |
5195381 |
T |
|
| Q |
101 |
ttatcagatataacatcaggtatataactttctattgaaactattacaaatttgaaagctgcagcataatgtaaatttatcccaaagtcaattgtacaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5195382 |
ttatcagatataacatcaggtatataactttctattgaaactattacaaatttgaaagctgcagcataatgtaaatttatcccaaagtcaattgtacaga |
5195481 |
T |
|
| Q |
201 |
aaattcttcatatcttcaagcacttaacctatcaatttctacaaacacaacactatatctatcatttaagcaagagctttttccaattctatatatcagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5195482 |
aaattcttcatatcttcaagcacttaacctatcaatttctacaaacacaacactatatctatcatttaagtaagagctttttccaattctatatatcagt |
5195581 |
T |
|
| Q |
301 |
caacaactaatgcaatgttgtggtagaatttaccttctggtgacatctatttaacaaagcaaaagttgtatatcgtcctatatgccggtgcctc |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5195582 |
caacaactaatgcaatgttgtggtagaatttcccttctagtgacatctatttaacaaagcaaaagttgtatatcgtcctatatgccagtgcctc |
5195675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 454 - 493
Target Start/End: Original strand, 5195706 - 5195745
Alignment:
| Q |
454 |
acatatttaagacaacgaagataacaaacaaaagataaaa |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5195706 |
acatatttaagacaacgaagataacaaacaaaagataaaa |
5195745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University