View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13037_low_1 (Length: 1060)

Name: NF13037_low_1
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13037_low_1
NF13037_low_1
[»] chr2 (9 HSPs)
chr2 (1-482)||(11119192-11119678)
chr2 (1-328)||(11111421-11111747)
chr2 (1-250)||(10793121-10793373)
chr2 (501-607)||(34169708-34169813)
chr2 (1-170)||(11156673-11156842)
chr2 (555-609)||(34168722-34168776)
chr2 (96-169)||(11137826-11137899)
chr2 (1-54)||(11146036-11146089)
chr2 (1-169)||(11150005-11150173)
[»] chr1 (2 HSPs)
chr1 (609-1039)||(3671752-3672183)
chr1 (498-610)||(3671607-3671719)
[»] chr5 (1 HSPs)
chr5 (516-589)||(18900816-18900886)


Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 11119192 - 11119678
Alignment:
Q  1 aagaattgttctcaacaccgggtgcagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11119192 aagaattgttctcaacaccgggtgcagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgat 11119291  T
Q  101 taaaatgggtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11119292 taaaatgggtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagt 11119391  T
Q  201 gtggcctcagaatcaatggagggggatatggttagttcaatctaaatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataa 300  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11119392 gtgacctcagaatcaatggagggggatatggttagttcaatctaaatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataa 11119491  T
Q  301 agaaaagtgctagctaggcacatctgtgccttgatgtgtatgttatgtgctttatgtgtgcaagataaccnnnnnnnnnnctaagtaattttc-----at 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |          |||||||||||||     ||    
T  11119492 agaaaagtgctagctaggcacatctgtgccttgatgtgtatgttatgtgctttatgtgtgcaagataatcttttttttttctaagtaattttcattatat 11119591  T
Q  396 tatagtatatcctctctttccgtcacaagttatgtctgtgnnnnnnncaacattccccattattagataatcatcctcttgcatcca 482  Q
    ||||||||||||||||||||||||||||||||||||| ||       ||||||| ||||||||||||| ||||||||||||||||||    
T  11119592 tatagtatatcctctctttccgtcacaagttatgtctttgtttttttcaacatttcccattattagatgatcatcctcttgcatcca 11119678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 11111421 - 11111747
Alignment:
Q  1 aagaattgttctcaacaccgggtgcagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgat 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||||||| |||||||||||||||||||||||    
T  11111421 aagaattattctcaacaccgggtgcagataccattagcattgtcaacagctttgcaaatagccaaaatgttttctttcagaactttataaattcaatgat 11111520  T
Q  101 taaaatgggtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagt 200  Q
    |||||||||||||||||  |||||||| ||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||  | |    
T  11111521 taaaatgggtaatattgatgtgcttaccggaaagaaaggagaaattagaaaacaatgcaattttattaacaagaaatcttctgaattggatcttggcatt 11111620  T
Q  201 gtggcct---cagaatcaatggagggggatatggttagttcaatctaaatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaa 297  Q
    |||||||   ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    |||||||||||||||||||||||    
T  11111621 gtggcctctgcagaatcaatggaaggggatatggttagttcaatctaaatgaatgtgggttactttagatgaa----atgtggtgattggaattcactaa 11111716  T
Q  298 taaagaaaagtgctagctaggcacatctgtg 328  Q
    |||||| ||||||| |||| |||||| ||||    
T  11111717 taaagagaagtgctggctaagcacatttgtg 11111747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 10793373 - 10793121
Alignment:
Q  1 aagaattgttctcaacaccgggtgcagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgat 100  Q
    |||||||||| ||||||||   ||||||||||| ||||||||| || |||||||  || ||||||| || ||||||  ||| |||||  ||  |||||||    
T  10793373 aagaattgttttcaacaccaaatgcagataccactagcattgttaataactttgccaataaccaaagtgctttctttgagagctttaagaaagcaatgat 10793274  T
Q  101 taaaatgggtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagt 200  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| || || || ||||||||||||||||| ||||||||||| || ||||||||   |    
T  10793273 taaaatgggtaatattggtgtgcttaccggaaagaaaggagaaataaggaaacaatgcaattttgttaacaaaaaatcttctgagttagatcttgccgct 10793174  T
Q  201 gtgg---cctcagaatcaatggagggggatatggttagttcaatctaaatgaa 250  Q
     |||   || |||||||| | || |||||||||||||||||||| ||||||||    
T  10793173 ctggtctccacagaatcatttgatggggatatggttagttcaatttaaatgaa 10793121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 501 - 607
Target Start/End: Original strand, 34169708 - 34169813
Alignment:
Q  501 tgttagataataagttattgggcgctttaggtttctaagttactaatggagtccattaggttttactatagatttgcttgtaacctttattatgtaatgt 600  Q
    ||||||||||||| ||||||| || ||||| |||||||||||||| |  | ||||||| |||||||||||  ||||||||||||||||||||| | ||||    
T  34169708 tgttagataataaattattggtcg-tttagatttctaagttactagtctaatccattaagttttactatatttttgcttgtaacctttattatattatgt 34169806  T
Q  601 cattgta 607  Q
    |||||||    
T  34169807 cattgta 34169813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 11156673 - 11156842
Alignment:
Q  1 aagaattgttctcaacaccgggtgcagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgat 100  Q
    |||| |||||||||||| | ||||||||||||||||||||||||||||| ||  | | | | ||||| | ||||||  ||| |||||    | |||||||    
T  11156673 aagagttgttctcaacatccggtgcagataccattagcattgtcaacaaattcagcaccgatcaaaacgctttctttgagagctttaaggctgcaatgat 11156772  T
Q  101 taaaatgggtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaac 170  Q
    ||||||||| |||||||| ||||| || || | ||||||||| |||||||| || ||||| |||||||||    
T  11156773 taaaatgggcaatattggtgtgctaacagggacgaaaggagagattagaaaacaatgcaactttgttaac 11156842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 555 - 609
Target Start/End: Original strand, 34168722 - 34168776
Alignment:
Q  555 attaggttttactatagatttgcttgtaacctttattatgtaatgtcattgtaat 609  Q
    |||||||||||||||| |||||||||||||||||||||| | |||||||||||||    
T  34168722 attaggttttactatatatttgcttgtaacctttattatattatgtcattgtaat 34168776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 11137826 - 11137899
Alignment:
Q  96 atgattaaaatgggtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaa 169  Q
    ||||||||||||||||||||||| ||||| || || || |||||||| |||||||| || ||||||||||||||    
T  11137826 atgattaaaatgggtaatattggtgtgctgaccgggaaaaaaggagagattagaaaacattgcaattttgttaa 11137899  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11146036 - 11146089
Alignment:
Q  1 aagaattgttctcaacaccgggtgcagataccattagcattgtcaacaactttg 54  Q
    |||| |||||||||||| | ||||| ||||||||||||||||||||||||||||    
T  11146036 aagagttgttctcaacatctggtgctgataccattagcattgtcaacaactttg 11146089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 11150005 - 11150173
Alignment:
Q  1 aagaattgttctcaacaccgggtgcagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgat 100  Q
    |||| |||||||||||| | ||| ||||||||||||||||||||||||| |||| || | | ||||| | ||| ||  ||| |||||    | | |||||    
T  11150005 aagagttgttctcaacatctggttcagataccattagcattgtcaacaaatttgcaaccgatcaaaaagctttttttgagagctttaaggctgctatgat 11150104  T
Q  101 taaaatgggtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaa 169  Q
     |||||||| |||||||| ||| | ||||| ||  ||||||| |||||||| || ||||| ||||||||    
T  11150105 caaaatgggaaatattggtgtgttaactgggaaacaaggagagattagaaaacaatgcaactttgttaa 11150173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 609 - 1039
Target Start/End: Original strand, 3671752 - 3672183
Alignment:
Q  609 ttctgctgtaattcgttccaaactctaattggccgattacgtcaacgataagcaacaattagaagctaagtacaaaattaagtaactaagttaacaaaaa 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671752 ttctgctgtaattcgttccaaactctaattggccgattacgtcaacgataagcaacaattagaagctaagtacaaaattaagtaactaagttaacaaaaa 3671851  T
Q  709 caaaagcgcgtttaatcatgtgatttcatttcaaactgtgcgaagagtttaaagtaataaatnnnnnnnt-tcgaagcaattttttgaaaatacaaagag 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  3671852 caaaagcgcgtttaatcatgtgatttcatttcaaactgtgcgaagagtttaaagtaataaataaaaaaaaatcgaagcaattttttgaaaatacaaagag 3671951  T
Q  808 aaaacgcagtgttatagatctgaagcgaagaaaaggaagcataccgaaagtgctagatagaaaacgagcttgaaggaaaacttgcgaagctctttgaaga 907  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671952 aaaacgcagtgttatagatctgaagcgaagaaaaggaagcataccgaaagtgctagatagaaaacgagcttgaaggaaaacttgcgaagctctttgaaga 3672051  T
Q  908 gaaggtagcatagtacaatgaagcttgaaccagcaaaagagagactcgacgcgccgacgtttactgcggtgagaatcccacgatcggaggcggtaagtgt 1007  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3672052 gaaggtagcatagtacaatgaagcttgaaccagcgaaagagagactcgacgcgccgacgtttactgcggtgagaatcccacgatcggaggcggtaagtgt 3672151  T
Q  1008 ggtgctgatggcggcggaggtcgccattgcgg 1039  Q
    ||||||||||||||||| ||||||||||||||    
T  3672152 ggtgctgatggcggcggtggtcgccattgcgg 3672183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 498 - 610
Target Start/End: Original strand, 3671607 - 3671719
Alignment:
Q  498 cactgttagataataagttattgggcgctttaggtttctaagttactaatggagtccattaggttttactatagatttgcttgtaacctttattatgtaa 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671607 cactgttagataataagttattgggcgctttaggtttctaagttactaatcgagtccattaggttttactatagatttgcttgtaacctttattatgtaa 3671706  T
Q  598 tgtcattgtaatt 610  Q
    |||||||||||||    
T  3671707 tgtcattgtaatt 3671719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 589
Target Start/End: Complemental strand, 18900886 - 18900816
Alignment:
Q  516 tattgggcgctttaggtttctaagttactaatggagtccattaggttttactatagatttgcttgtaaccttta 589  Q
    |||||||| |||||||||||||||||| ||   |||||||||| ||||||||||| |||  |||||||| ||||    
T  18900886 tattgggccctttaggtttctaagttagta---gagtccattatgttttactatatattctcttgtaactttta 18900816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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