View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_low_10 (Length: 492)
Name: NF13037_low_10
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 189 - 477
Target Start/End: Original strand, 7399860 - 7400151
Alignment:
| Q |
189 |
caaggttagccttctgttgcacttctgttnnnnnnncacaata-atattattcttttatttttctattttctcttcacaattaccctttaatctttcaca |
287 |
Q |
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| T |
7399860 |
caaggttagccttctgttgcacttccgttaaaaaaacacaatttatattattcttttatttttctattttctcttcacaattaccctttaatctttcaca |
7399959 |
T |
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| Q |
288 |
--aattagaaacacattctggaaagaaaaacccagaacaagaaaggaaacggcagaacacgaaacacaaattacatgtcatggctaagttccatattatg |
385 |
Q |
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| T |
7399960 |
caaattagaaacacattctggaaagaaaaacccagaacaagaaaggaaaatgcagaacacgaaacacaaattacctgtcatggctaagttccatattatg |
7400059 |
T |
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| Q |
386 |
aatatggtttataatgtagttttacgtaatgacttttctagcatattatgtaaagaaagaactccatattatgacatatcaatgaatgaagt |
477 |
Q |
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| T |
7400060 |
aatatggtttataatgtaattttacgtaatgacttttctagcatattatgtaaagaaagaactccatattatgacatatcaatgaatgaagt |
7400151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 7399677 - 7399780
Alignment:
| Q |
7 |
gatcaatcgagttggactttacggaagtgttgcaagccctacataggtggaaacaagatttaagttatgatttttaaatgacaaaattatatacataatc |
106 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| ||| || |
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| T |
7399677 |
gatcaatcgagttggactttaaggaagtgttgcaagccctacataggcgaaaacaagatttaagttatgatttttaaatgacaaaattacatatatagtc |
7399776 |
T |
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| Q |
107 |
cctt |
110 |
Q |
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|||| |
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| T |
7399777 |
cctt |
7399780 |
T |
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